Arcane  4.1.12.0
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Arcane::MshParallelMeshReader Class Reference

Mesh file reader in msh format. More...

Inheritance diagram for Arcane::MshParallelMeshReader:
Collaboration diagram for Arcane::MshParallelMeshReader:

Classes

class  MshToArcaneTypeInfo
 Mapping information between MSH type and Arcane type. More...
struct  MshElementBlock
 Info of a block for $Elements for version 4. More...
struct  MshNodeBlock
 Info of a block for $Nodes. More...
class  MshItemKindInfo
 Information to create entities of a certain kind. More...
class  MshMeshAllocateInfo
 Information to create Arcane entities. More...

Public Types

using MshPhysicalName = impl::MshMeshGenerationInfo::MshPhysicalName
using MshEntitiesNodes = impl::MshMeshGenerationInfo::MshEntitiesNodes
using MshEntitiesWithNodes = impl::MshMeshGenerationInfo::MshEntitiesWithNodes
using MshPeriodicOneInfo = impl::MshMeshGenerationInfo::MshPeriodicOneInfo
using MshPeriodicInfo = impl::MshMeshGenerationInfo::MshPeriodicInfo
using eReturnType = typename IMeshReader::eReturnType

Public Member Functions

 MshParallelMeshReader (ITraceMng *tm)
eReturnType readMeshFromMshFile (IMesh *mesh, const String &filename, bool use_internal_partition) override
 Reads the mesh contained in the file filename and constructs it in mesh.
Public Member Functions inherited from Arcane::TraceAccessor
 TraceAccessor (ITraceMng *m)
 Constructs an accessor via the trace manager m.
 TraceAccessor (const TraceAccessor &rhs)
 Copy constructor.
TraceAccessoroperator= (const TraceAccessor &rhs)
 Copy assignment operator.
virtual ~TraceAccessor ()
 Frees resources.
ITraceMngtraceMng () const
 Trace manager.
TraceMessage info () const
 Flow for an information message.
TraceMessage pinfo () const
 Flow for a parallel information message.
TraceMessage info (char category) const
 Flow for an information message of a given category.
TraceMessage pinfo (char category) const
 Flow for a parallel information message of a given category.
TraceMessage info (bool v) const
 Flow for an information message.
TraceMessage warning () const
 Flow for a warning message.
TraceMessage pwarning () const
TraceMessage error () const
 Flow for an error message.
TraceMessage perror () const
TraceMessage log () const
 Flow for a log message.
TraceMessage plog () const
 Flow for a log message.
TraceMessage logdate () const
 Flow for a log message preceded by the date.
TraceMessage fatal () const
 Flow for a fatal error message.
TraceMessage pfatal () const
 Flow for a parallel fatal error message.
TraceMessageDbg debug (Trace::eDebugLevel=Trace::Medium) const
 Flow for a debug message.
Trace::eDebugLevel configDbgLevel () const
 Debug level of the configuration file.
TraceMessage info (Int32 verbose_level) const
 Flow for an information message of a given level.
TraceMessage linfo () const
 Flow for an information message with the local information level of this instance.
TraceMessage linfo (Int32 relative_level) const
 Flow for an information message with the local information level of this instance.
void fatalMessage (const StandaloneTraceMessage &o) const

Private Member Functions

void _readNodesFromFile ()
 Reads mesh nodes.
void _readNodesOneEntity (MshNodeBlock &node_block)
Integer _readElementsFromFile ()
 Reading of elements (cells, faces, ...).
void _readMeshFromFile ()
void _setNodesCoordinates ()
 Positions the node coordinates.
void _allocateCells ()
void _allocateGroups ()
void _addFaceGroup (const MshElementBlock &block, const String &group_name)
 Adds faces to the group group_name.
void _addFaceGroupOnePart (const MshElementBlock &block, ConstArrayView< Int64 > connectivities, const String &group_name)
void _addCellOrNodeGroup (ArrayView< Int64 > block_uids, Int32 block_index, const String &group_name, IItemFamily *family, bool filter_invalid)
 Adds cells or nodes to the group group_name.
void _addCellOrNodeGroupOnePart (ConstArrayView< Int64 > uids, const String &group_name, Int32 block_index, IItemFamily *family, bool filter_invalid)
void _readPhysicalNames ()
void _readEntities ()
 Reading entities.
void _readPeriodic ()
 Reading periodic information.
void _readOneEntity (Int32 entity_dim, Int32 entity_index_in_dim)
bool _getIsEndOfFileAndBroadcast ()
 Returns true if we are at the end of the file.
String _getNextLineAndBroadcast ()
 Reads the next line value and broadcasts it to other ranks.
Int32 _getIntegerAndBroadcast ()
Int64 _getInt64AndBroadcast ()
void _getInt64ArrayAndBroadcast (ArrayView< Int64 > values)
void _getInt32ArrayAndBroadcast (ArrayView< Int32 > values)
void _getDoubleArrayAndBroadcast (ArrayView< double > values)
void _readOneElementBlock (MshElementBlock &block)
 Reads an 'Element' type block.
void _computeNodesPartition ()
void _computeOwnItems (MshElementBlock &block, MshItemKindInfo &item_kind_info, bool is_generate_uid)
Real3 _getReal3 ()
Int32 _getInt32 ()
Int64 _getInt64 ()
void _goToNextLine ()
void _readAndCheck (const String &expected_value)
 Tries to read the value value.
void _addMshTypeInfo (Int32 msh_type, ItemTypeId arcane_type, ConstArrayView< Int16 > reorder_infos={})
const MshToArcaneTypeInfomshToArcaneTypeInfo (Int32 msh_type) const
void _initTypes ()

Private Attributes

IMeshm_mesh = nullptr
IParallelMngm_parallel_mng = nullptr
Int32 m_master_io_rank = A_NULL_RANK
bool m_is_parallel = false
Ref< IosFilem_ios_file
impl::MshMeshGenerationInfom_mesh_info = nullptr
MshMeshAllocateInfo m_mesh_allocate_info
Int32 m_nb_part = 4
 Number of partitions for reading nodes and blocks.
UniqueArray< Int32m_parts_rank
 List of ranks participating in data conservation.
bool m_is_binary = false
 True if the format is binary.
UniqueArray< MshToArcaneTypeInfom_msh_to_arcane_type_infos
 Conversion information between MSH and Arcane types for entities.
Int32 m_verbosity_level = 0
 Verbosity level.

Additional Inherited Members

Protected Member Functions inherited from Arcane::TraceAccessor
void _setLocalVerboseLevel (Int32 v)
Int32 _localVerboseLevel () const

Detailed Description

Mesh file reader in msh format.

The msh format is used by the gmsh library.

The reader supports version 4.1 of this format.

Currently, the following tags are supported:

  • $PhysicalNames
  • $Entities
  • $Nodes
  • $Elements
  • $Periodic (in progress)

Definition at line 82 of file MshParallelMeshReader.cc.

Member Typedef Documentation

◆ eReturnType

using Arcane::MshParallelMeshReader::eReturnType = typename IMeshReader::eReturnType

Definition at line 96 of file MshParallelMeshReader.cc.

◆ MshEntitiesNodes

using Arcane::MshParallelMeshReader::MshEntitiesNodes = impl::MshMeshGenerationInfo::MshEntitiesNodes

Definition at line 89 of file MshParallelMeshReader.cc.

◆ MshEntitiesWithNodes

using Arcane::MshParallelMeshReader::MshEntitiesWithNodes = impl::MshMeshGenerationInfo::MshEntitiesWithNodes

Definition at line 90 of file MshParallelMeshReader.cc.

◆ MshPeriodicInfo

using Arcane::MshParallelMeshReader::MshPeriodicInfo = impl::MshMeshGenerationInfo::MshPeriodicInfo

Definition at line 92 of file MshParallelMeshReader.cc.

◆ MshPeriodicOneInfo

using Arcane::MshParallelMeshReader::MshPeriodicOneInfo = impl::MshMeshGenerationInfo::MshPeriodicOneInfo

Definition at line 91 of file MshParallelMeshReader.cc.

◆ MshPhysicalName

using Arcane::MshParallelMeshReader::MshPhysicalName = impl::MshMeshGenerationInfo::MshPhysicalName

Definition at line 88 of file MshParallelMeshReader.cc.

Constructor & Destructor Documentation

◆ MshParallelMeshReader()

Arcane::MshParallelMeshReader::MshParallelMeshReader ( ITraceMng * tm)
explicit

Definition at line 293 of file MshParallelMeshReader.cc.

Member Function Documentation

◆ _addCellOrNodeGroup()

void Arcane::MshParallelMeshReader::_addCellOrNodeGroup ( ArrayView< Int64 > block_uids,
Int32 block_index,
const String & group_name,
IItemFamily * family,
bool filter_invalid )
private

Adds cells or nodes to the group group_name.

Definition at line 1421 of file MshParallelMeshReader.cc.

References m_parts_rank.

◆ _addCellOrNodeGroupOnePart()

void Arcane::MshParallelMeshReader::_addCellOrNodeGroupOnePart ( ConstArrayView< Int64 > uids,
const String & group_name,
Int32 block_index,
IItemFamily * family,
bool filter_invalid )
private

Definition at line 1437 of file MshParallelMeshReader.cc.

◆ _addFaceGroup()

void Arcane::MshParallelMeshReader::_addFaceGroup ( const MshElementBlock & block,
const String & group_name )
private

Adds faces to the group group_name.

Definition at line 1315 of file MshParallelMeshReader.cc.

References Arcane::MshParallelMeshReader::MshElementBlock::connectivities, m_parts_rank, and Arcane::Array< T >::view().

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◆ _addFaceGroupOnePart()

void Arcane::MshParallelMeshReader::_addFaceGroupOnePart ( const MshElementBlock & block,
ConstArrayView< Int64 > connectivities,
const String & group_name )
private

Definition at line 1330 of file MshParallelMeshReader.cc.

◆ _addMshTypeInfo()

void Arcane::MshParallelMeshReader::_addMshTypeInfo ( Int32 msh_type,
ItemTypeId arcane_type,
ConstArrayView< Int16 > reorder_infos = {} )
private

Definition at line 1919 of file MshParallelMeshReader.cc.

◆ _allocateCells()

void Arcane::MshParallelMeshReader::_allocateCells ( )
private

Definition at line 1198 of file MshParallelMeshReader.cc.

◆ _allocateGroups()

void Arcane::MshParallelMeshReader::_allocateGroups ( )
private

Definition at line 1220 of file MshParallelMeshReader.cc.

◆ _computeNodesPartition()

void Arcane::MshParallelMeshReader::_computeNodesPartition ( )
private

Rank to which the nodes of my part belong.

Definition at line 512 of file MshParallelMeshReader.cc.

References Arcane::TraceAccessor::info(), Arcane::math::isNearlyEqual(), m_nb_part, m_parts_rank, Arcane::math::max(), Arcane::math::min(), Arcane::IParallelMng::reduce(), Arcane::MessagePassing::ReduceMax, Arcane::MessagePassing::ReduceMin, Arcane::MessagePassing::ReduceSum, and Arcane::Real3POD::x.

Referenced by _readNodesFromFile().

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◆ _computeOwnItems()

void Arcane::MshParallelMeshReader::_computeOwnItems ( MshElementBlock & block,
MshItemKindInfo & item_kind_info,
bool is_generate_uid )
private

Definition at line 1076 of file MshParallelMeshReader.cc.

◆ _getDoubleArrayAndBroadcast()

void Arcane::MshParallelMeshReader::_getDoubleArrayAndBroadcast ( ArrayView< double > values)
private

Definition at line 429 of file MshParallelMeshReader.cc.

◆ _getInt32()

Int32 Arcane::MshParallelMeshReader::_getInt32 ( )
private

Definition at line 470 of file MshParallelMeshReader.cc.

◆ _getInt32ArrayAndBroadcast()

void Arcane::MshParallelMeshReader::_getInt32ArrayAndBroadcast ( ArrayView< Int32 > values)
private

Definition at line 409 of file MshParallelMeshReader.cc.

◆ _getInt64()

Int64 Arcane::MshParallelMeshReader::_getInt64 ( )
private

Definition at line 486 of file MshParallelMeshReader.cc.

◆ _getInt64AndBroadcast()

Int64 Arcane::MshParallelMeshReader::_getInt64AndBroadcast ( )
private

Definition at line 373 of file MshParallelMeshReader.cc.

◆ _getInt64ArrayAndBroadcast()

void Arcane::MshParallelMeshReader::_getInt64ArrayAndBroadcast ( ArrayView< Int64 > values)
private

Definition at line 389 of file MshParallelMeshReader.cc.

◆ _getIsEndOfFileAndBroadcast()

bool Arcane::MshParallelMeshReader::_getIsEndOfFileAndBroadcast ( )
private

Returns true if we are at the end of the file.

Definition at line 334 of file MshParallelMeshReader.cc.

References Arcane::TraceAccessor::info().

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◆ _getNextLineAndBroadcast()

String Arcane::MshParallelMeshReader::_getNextLineAndBroadcast ( )
private

Reads the next line value and broadcasts it to other ranks.

Definition at line 311 of file MshParallelMeshReader.cc.

References Arcane::TraceAccessor::info().

Referenced by _readAndCheck(), _readPeriodic(), and readMeshFromMshFile().

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◆ _getReal3()

Real3 Arcane::MshParallelMeshReader::_getReal3 ( )
private

Definition at line 449 of file MshParallelMeshReader.cc.

◆ _goToNextLine()

void Arcane::MshParallelMeshReader::_goToNextLine ( )
private

Definition at line 502 of file MshParallelMeshReader.cc.

◆ _initTypes()

void Arcane::MshParallelMeshReader::_initTypes ( )
private

Definition at line 1877 of file MshParallelMeshReader.cc.

◆ _readAndCheck()

void Arcane::MshParallelMeshReader::_readAndCheck ( const String & expected_value)
private

Tries to read the value value.

Definition at line 1741 of file MshParallelMeshReader.cc.

References _getNextLineAndBroadcast(), ARCANE_FATAL, Arcane::String::bytes(), Arcane::TraceAccessor::info(), m_is_binary, Arcane::SpanImpl< T, SizeType, Extent >::size(), and Arcane::FixedArray< T, NbElement >::span().

Referenced by _readEntities().

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◆ _readElementsFromFile()

Integer Arcane::MshParallelMeshReader::_readElementsFromFile ( )
private

Reading of elements (cells, faces, ...).

Here is the format description:

* $Elements
*   numEntityBlocks(size_t) numElements(size_t)
*     minElementTag(size_t) maxElementTag(size_t)
*   entityDim(int) entityTag(int) elementType(int; see below)
*     numElementsInBlock(size_t)
*     elementTag(size_t) nodeTag(size_t) ...
*     ...
*   ...
* $EndElements
* 

In version 4, elements are sorted by type (eItemKind). Each entity block may have a different dimension. There is no mesh dimension associated with it. Therefore, we consider the dimension of the mesh to be the highest dimension of the blocks we read. This also means that we are forced to read all blocks before we can know the mesh dimension.

In parallel, each block is distributed across the ranks in m_parts_rank.

Returns
the mesh dimension.

Definition at line 863 of file MshParallelMeshReader.cc.

References _readOneElementBlock(), ARCANE_FATAL, ARCANE_THROW, Arcane::TraceAccessor::info(), Arcane::ItemTypeInfo::itemTypeId(), m_is_binary, m_verbosity_level, Arcane::math::max(), Arcane::ItemTypeInfo::nbLocalNode(), Arcane::Array< T >::resize(), Arcane::ItemTypeMng::typeFromId(), Arcane::ItemTypeInfo::typeName(), and Arcane::FixedArray< T, NbElement >::view().

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◆ _readEntities()

void Arcane::MshParallelMeshReader::_readEntities ( )
private

Reading entities.

The format is:

*    $Entities
*      numPoints(size_t) numCurves(size_t)
*        numSurfaces(size_t) numVolumes(size_t)
*      pointTag(int) X(double) Y(double) Z(double)
*        numPhysicalTags(size_t) physicalTag(int) ...
*      ...
*      curveTag(int) minX(double) minY(double) minZ(double)
*        maxX(double) maxY(double) maxZ(double)
*        numPhysicalTags(size_t) physicalTag(int) ...
*        numBoundingPoints(size_t) pointTag(int) ...
*      ...
*      surfaceTag(int) minX(double) minY(double) minZ(double)
*        maxX(double) maxY(double) maxZ(double)
*        numPhysicalTags(size_t) physicalTag(int) ...
*        numBoundingCurves(size_t) curveTag(int) ...
*      ...
*      volumeTag(int) minX(double) minY(double) minZ(double)
*        maxX(double) maxY(double) maxZ(double)
*        numPhysicalTags(size_t) physicalTag(int) ...
*        numBoundngSurfaces(size_t) surfaceTag(int) ...
*      ...
*    $EndEntities
* 

Definition at line 1542 of file MshParallelMeshReader.cc.

References _readAndCheck(), ARCANE_FATAL, Arcane::TraceAccessor::info(), m_is_binary, m_verbosity_level, and Arcane::FixedArray< T, NbElement >::view().

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◆ _readMeshFromFile()

void Arcane::MshParallelMeshReader::_readMeshFromFile ( )
private

Definition at line 1775 of file MshParallelMeshReader.cc.

◆ _readNodesFromFile()

void Arcane::MshParallelMeshReader::_readNodesFromFile ( )
private

Reads mesh nodes.

Reads the uniqueId() of the nodes and their associated coordinates.

The format is as follows:

$Nodes
numEntityBlocks(size_t) numNodes(size_t)
minNodeTag(size_t) maxNodeTag(size_t)
entityDim(int) entityTag(int) parametric(int; 0 or 1)
numNodesInBlock(size_t)
nodeTag(size_t)
...
x(double) y(double) z(double)
< u(double; if parametric and entityDim >= 1) >
< v(double; if parametric and entityDim >= 2) >
< w(double; if parametric and entityDim == 3) >
...
...
*$EndNodes

Definition at line 591 of file MshParallelMeshReader.cc.

References _computeNodesPartition(), ARCANE_THROW, Arcane::MshParallelMeshReader::MshNodeBlock::index, Arcane::TraceAccessor::info(), m_is_binary, m_nb_part, Arcane::Array< T >::resize(), and Arcane::FixedArray< T, NbElement >::view().

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◆ _readNodesOneEntity()

void Arcane::MshParallelMeshReader::_readNodesOneEntity ( MshNodeBlock & node_block)
private

Definition at line 633 of file MshParallelMeshReader.cc.

◆ _readOneElementBlock()

void Arcane::MshParallelMeshReader::_readOneElementBlock ( MshElementBlock & block)
private

Reads an 'Element' type block.

Definition at line 758 of file MshParallelMeshReader.cc.

References Arcane::Array< T >::addRange(), Arcane::IParallelMng::commRank(), Arcane::MshParallelMeshReader::MshElementBlock::connectivities, Arcane::TraceAccessor::info(), Arcane::MshParallelMeshReader::MshElementBlock::item_nb_node, m_is_binary, m_nb_part, m_parts_rank, m_verbosity_level, Arcane::MshParallelMeshReader::MshElementBlock::nb_entity, Arcane::IParallelMng::recv(), Arcane::Array< T >::resize(), and Arcane::Array< T >::view().

Referenced by _readElementsFromFile().

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◆ _readOneEntity()

void Arcane::MshParallelMeshReader::_readOneEntity ( Int32 entity_dim,
Int32 entity_index_in_dim )
private

Definition at line 1599 of file MshParallelMeshReader.cc.

◆ _readPeriodic()

void Arcane::MshParallelMeshReader::_readPeriodic ( )
private

Reading periodic information.

The format is:

*   $Periodic
*     numPeriodicLinks(size_t)
*     entityDim(int) entityTag(int) entityTagMaster(int)
*     numAffine(size_t) value(double) ...
*     numCorrespondingNodes(size_t)
*       nodeTag(size_t) nodeTagMaster(size_t)
*       ...
*     ...
*   $EndPeriodic
* 

Definition at line 1690 of file MshParallelMeshReader.cc.

References _getNextLineAndBroadcast(), ARCANE_FATAL, Arcane::TraceAccessor::info(), Arcane::impl::MshMeshGenerationInfo::MshPeriodicOneInfo::m_affine_values, Arcane::impl::MshMeshGenerationInfo::MshPeriodicOneInfo::m_corresponding_nodes, m_verbosity_level, Arcane::Array< T >::resize(), Arccore::Array< T >::resize(), and Arcane::FixedArray< T, NbElement >::view().

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◆ _readPhysicalNames()

void Arcane::MshParallelMeshReader::_readPhysicalNames ( )
private

Definition at line 1477 of file MshParallelMeshReader.cc.

◆ _setNodesCoordinates()

void Arcane::MshParallelMeshReader::_setNodesCoordinates ( )
private

Positions the node coordinates.

The list is distributed across the processors of the ranks in m_parts_rank. We loop through the ranks in this list, and each rank sends to the others the list of coordinates of the nodes it contains. Each rank checks if any nodes from this list belong to it, and if so, positions them.

Note
This algorithm sends all nodes piece by piece and is therefore not truly parallel in execution time. This could be improved if we knew the range of uniqueIds() for each part and thus directly request the desired coordinates from the concerned rank.

Definition at line 1164 of file MshParallelMeshReader.cc.

References Arcane::IItemFamily::itemsUniqueIdToLocalId(), m_parts_rank, Arcane::Array< T >::resize(), and Arcane::ConstArrayView< T >::size().

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◆ mshToArcaneTypeInfo()

const MshParallelMeshReader::MshToArcaneTypeInfo & Arcane::MshParallelMeshReader::mshToArcaneTypeInfo ( Int32 msh_type) const
private

Definition at line 1935 of file MshParallelMeshReader.cc.

◆ readMeshFromMshFile()

IMeshReader::eReturnType Arcane::MshParallelMeshReader::readMeshFromMshFile ( IMesh * mesh,
const String & filename,
bool use_internal_partition )
overridevirtual

Member Data Documentation

◆ m_ios_file

Ref<IosFile> Arcane::MshParallelMeshReader::m_ios_file
private

Definition at line 211 of file MshParallelMeshReader.cc.

◆ m_is_binary

bool Arcane::MshParallelMeshReader::m_is_binary = false
private

True if the format is binary.

Definition at line 219 of file MshParallelMeshReader.cc.

Referenced by _readAndCheck(), _readElementsFromFile(), _readEntities(), _readNodesFromFile(), and _readOneElementBlock().

◆ m_is_parallel

bool Arcane::MshParallelMeshReader::m_is_parallel = false
private

Definition at line 210 of file MshParallelMeshReader.cc.

◆ m_master_io_rank

Int32 Arcane::MshParallelMeshReader::m_master_io_rank = A_NULL_RANK
private

Definition at line 209 of file MshParallelMeshReader.cc.

◆ m_mesh

IMesh* Arcane::MshParallelMeshReader::m_mesh = nullptr
private

Definition at line 207 of file MshParallelMeshReader.cc.

◆ m_mesh_allocate_info

MshMeshAllocateInfo Arcane::MshParallelMeshReader::m_mesh_allocate_info
private

Definition at line 213 of file MshParallelMeshReader.cc.

◆ m_mesh_info

impl::MshMeshGenerationInfo* Arcane::MshParallelMeshReader::m_mesh_info = nullptr
private

Definition at line 212 of file MshParallelMeshReader.cc.

◆ m_msh_to_arcane_type_infos

UniqueArray<MshToArcaneTypeInfo> Arcane::MshParallelMeshReader::m_msh_to_arcane_type_infos
private

Conversion information between MSH and Arcane types for entities.

Definition at line 221 of file MshParallelMeshReader.cc.

◆ m_nb_part

Int32 Arcane::MshParallelMeshReader::m_nb_part = 4
private

Number of partitions for reading nodes and blocks.

Definition at line 215 of file MshParallelMeshReader.cc.

Referenced by _computeNodesPartition(), _readNodesFromFile(), _readOneElementBlock(), and readMeshFromMshFile().

◆ m_parallel_mng

IParallelMng* Arcane::MshParallelMeshReader::m_parallel_mng = nullptr
private

Definition at line 208 of file MshParallelMeshReader.cc.

◆ m_parts_rank

UniqueArray<Int32> Arcane::MshParallelMeshReader::m_parts_rank
private

List of ranks participating in data conservation.

Definition at line 217 of file MshParallelMeshReader.cc.

Referenced by _addCellOrNodeGroup(), _addFaceGroup(), _computeNodesPartition(), _readOneElementBlock(), _setNodesCoordinates(), and readMeshFromMshFile().

◆ m_verbosity_level

Int32 Arcane::MshParallelMeshReader::m_verbosity_level = 0
private

Verbosity level.

Definition at line 223 of file MshParallelMeshReader.cc.

Referenced by _readElementsFromFile(), _readEntities(), _readOneElementBlock(), and _readPeriodic().


The documentation for this class was generated from the following file: