21#include <vtkUnstructuredGrid.h>
22#include <vtkUnstructuredGridReader.h>
24#include <vtkCellIterator.h>
25#include <vtkIdTypeArray.h>
26#include <vtkCellData.h>
27#include <vtkPointData.h>
28#include <vtkDataSetAttributes.h>
29#include <vtkArrayDispatch.h>
30#include <vtkDataArrayAccessor.h>
31#include <vtkPolyDataReader.h>
32#include <vtkPolyData.h>
33#include <vtkSmartPointer.h>
34#include <vtkCellArray.h>
35#include <vtkVersion.h>
36#if VTK_VERSION_NUMBER >= 900000000
37using vtkIdType_generic = vtkIdType
const;
39using vtkIdType_generic = vtkIdType;
43#include <arccore/base/String.h>
44#include <arccore/base/FatalErrorException.h>
45#include <vtkXMLUnstructuredGridReader.h>
46#include <vtkXMLPolyDataReader.h>
49#include "arcane/core/AbstractService.h"
50#include "arcane/core/ICaseMeshReader.h"
52#include "arcane/core/IMeshBuilder.h"
53#include "arcane/core/MeshBuildInfo.h"
54#include "arcane/core/IPrimaryMesh.h"
56#include "arcane/core/IMeshInitialAllocator.h"
57#include "arcane/core/IVariableMng.h"
59#include "arcane/utils/ITraceMng.h"
60#include "arcane/utils/UniqueArray.h"
61#include "arcane/utils/Real3.h"
62#include "arcane/mesh/CellFamily.h"
63#include "arcane/core/MeshVariableScalarRef.h"
64#include "arcane/core/MeshVariableArrayRef.h"
66#include "arcane/core/ItemAllocationInfo.h"
67#include "arcane/core/VariableBuildInfo.h"
69#include "arcane/utils/OStringStream.h"
71#include "arcane/core/IXmlDocumentHolder.h"
72#include "arcane/core/XmlNode.h"
73#include "arcane/core/internal/IVariableMngInternal.h"
74#include "arcane/core/datatype/DataTypeTraits.h"
76#include "arcane/std/VtkPolyhedralMeshIO_axl.h"
87namespace VtkPolyhedralTools
98 bool print_mesh_info =
false;
99 bool print_debug_info =
false;
106class VtkPolyhedralMeshIOService
113 , m_print_info_level(print_info_level)
123 VtkReader() =
default;
125 static String supportedVtkExtensions()
noexcept {
return "vtk,vtu"; };
175 bool readHasFailed()
const noexcept {
return m_read_status.failure; }
178 vtkCellData* cellData();
179 vtkPointData* pointData();
180 vtkCellData* faceData();
182 bool isEmpty()
const noexcept {
return m_is_empty; }
183 bool doRead()
const noexcept {
return m_do_read; }
187 bool m_is_empty =
true;
188 bool m_do_read =
false;
192 vtkNew<vtkUnstructuredGridReader> m_vtk_grid_reader;
193 vtkNew<vtkXMLUnstructuredGridReader> m_vtk_xml_grid_reader;
194 vtkNew<vtkPolyDataReader> m_vtk_face_grid_reader;
195 vtkNew<vtkXMLPolyDataReader> m_vtk_xml_face_grid_reader;
196 vtkUnstructuredGrid* m_vtk_grid =
nullptr;
197 vtkPolyData* m_vtk_face_grid =
nullptr;
213 NodeUidToIndexMap m_node_uid_to_index;
215 vtkCellData* m_cell_data =
nullptr;
216 vtkPointData* m_point_data =
nullptr;
217 vtkCellData* m_face_data =
nullptr;
218 vtkCellArray* m_poly_data =
nullptr;
220 void _printMeshInfos()
const;
223 template <
typename Connectivity2DArray>
224 static void _flattenConnectivity(Connectivity2DArray connected_item_2darray,
Int32Span nb_connected_item_per_source_item,
Int64UniqueArray& connected_item_array);
225 void _readPlainTextVtkGrid(
const String& filename);
226 void _readXlmVtkGrid(
const String& filename);
227 void _checkVtkGrid()
const;
228 void _readPlainTextVtkFaceGrid(
const String& faces_filename);
229 void _readXmlVtkFaceGrid(
const String& faces_filename);
230 void _readfaceNodesInFaceMesh();
240 bool do_read = is_parallel_read ?
mesh->parallelMng()->isMasterIO() :
true;
241 using VtkReaderPtr = std::unique_ptr<VtkReader>;
242 VtkReaderPtr reader = std::make_unique<VtkReader>();
244 reader = std::make_unique<VtkReader>(filename, m_print_info_level);
245 if (reader->readHasFailed())
246 return reader->readStatus();
248 _fillItemAllocationInfo(item_allocation_info, *reader);
249 auto polyhedral_mesh_allocator =
mesh->initialAllocator()->polyhedralMeshAllocator();
250 polyhedral_mesh_allocator->allocateItems(item_allocation_info);
251 _readVariablesAndGroups(
mesh, *reader);
252 return reader->readStatus();
262 bool is_array =
false;
272 template <
template <
class>
class VariableRootType,
template <
class>
class ArrayVariableRootType>
280class VtkPolyhedralCaseMeshReader
291 , m_read_info(read_info)
292 , m_print_info_level(print_info_level)
307 m_trace_mng->info() <<
"---Création du maillage polyédrique : " << pm->
name() <<
"---";
308 m_trace_mng->info() <<
"--Lecture du fichier de maillage " << m_read_info.fileName();
310 auto read_status = polyhedral_vtk_service.read(pm, m_read_info.fileName(), m_read_info.isParallelRead());
311 if (read_status.failure)
313 m_trace_mng->info() << read_status.info_message;
332 if (VtkPolyhedralMeshIOService::VtkReader::supportedVtkExtensions().contains(read_info.format()))
342 ServiceProperty(
"VtkPolyhedralCaseMeshReader",
ST_CaseOption),
348void VtkPolyhedralMeshIOService::
349_fillItemAllocationInfo(ItemAllocationInfo& item_allocation_info, VtkReader& vtk_reader)
351 auto nb_item_family = 4;
352 auto nb_connected_family = 3;
353 item_allocation_info.family_infos.resize(nb_item_family);
354 for (
auto& family_info : item_allocation_info.family_infos) {
355 family_info.connected_family_infos.resize(nb_connected_family);
358 auto& cell_family_info = item_allocation_info.family_infos[0];
359 cell_family_info.name =
"Cell";
360 cell_family_info.item_kind =
IK_Cell;
361 cell_family_info.item_uids = vtk_reader.cellUids();
362 auto& node_family_info = item_allocation_info.family_infos[1];
363 node_family_info.name =
"Node";
364 node_family_info.item_kind =
IK_Node;
365 node_family_info.item_uids = vtk_reader.nodeUids();
366 auto& face_family_info = item_allocation_info.family_infos[2];
367 face_family_info.name =
"Face";
368 face_family_info.item_kind =
IK_Face;
369 face_family_info.item_uids = vtk_reader.faceUids();
370 auto& edge_family_info = item_allocation_info.family_infos[3];
371 edge_family_info.name =
"Edge";
372 edge_family_info.item_kind =
IK_Edge;
373 edge_family_info.item_uids = vtk_reader.edgeUids();
375 auto cell_connected_family_index = 0;
376 auto& cell_connected_node_family_info = cell_family_info.connected_family_infos[cell_connected_family_index++];
377 cell_connected_node_family_info.name = node_family_info.name;
378 cell_connected_node_family_info.item_kind = node_family_info.item_kind;
379 cell_connected_node_family_info.connectivity_name =
"CellToNodes";
380 cell_connected_node_family_info.nb_connected_items_per_item = vtk_reader.cellNbNodes();
381 cell_connected_node_family_info.connected_items_uids = vtk_reader.cellNodes();
383 auto& cell_connected_face_family_info = cell_family_info.connected_family_infos[cell_connected_family_index++];
384 cell_connected_face_family_info.name = face_family_info.name;
385 cell_connected_face_family_info.item_kind = face_family_info.item_kind;
386 cell_connected_face_family_info.connectivity_name =
"CellToFaces";
387 cell_connected_face_family_info.nb_connected_items_per_item = vtk_reader.cellNbFaces();
388 cell_connected_face_family_info.connected_items_uids = vtk_reader.cellFaces();
390 auto& cell_connected_edge_family_info = cell_family_info.connected_family_infos[cell_connected_family_index++];
391 cell_connected_edge_family_info.name = edge_family_info.name;
392 cell_connected_edge_family_info.item_kind = edge_family_info.item_kind;
393 cell_connected_edge_family_info.connectivity_name =
"CellToEdges";
394 cell_connected_edge_family_info.nb_connected_items_per_item = vtk_reader.cellNbEdges();
395 cell_connected_edge_family_info.connected_items_uids = vtk_reader.cellEdges();
397 auto face_connected_family_index = 0;
398 auto& face_connected_cell_family_info = face_family_info.connected_family_infos[face_connected_family_index++];
399 face_connected_cell_family_info.name = cell_family_info.name;
400 face_connected_cell_family_info.item_kind = cell_family_info.item_kind;
401 face_connected_cell_family_info.connectivity_name =
"FaceToCells";
402 face_connected_cell_family_info.nb_connected_items_per_item = vtk_reader.faceNbCells();
403 face_connected_cell_family_info.connected_items_uids = vtk_reader.faceCells();
405 auto& face_connected_node_family_info = face_family_info.connected_family_infos[face_connected_family_index++];
406 face_connected_node_family_info.name = node_family_info.name;
407 face_connected_node_family_info.item_kind = node_family_info.item_kind;
408 face_connected_node_family_info.connectivity_name =
"FaceToNodes";
409 face_connected_node_family_info.nb_connected_items_per_item = vtk_reader.faceNbNodes();
410 face_connected_node_family_info.connected_items_uids = vtk_reader.faceNodes();
412 auto& face_connected_edge_family_info = face_family_info.connected_family_infos[face_connected_family_index];
413 face_connected_edge_family_info.name = edge_family_info.name;
414 face_connected_edge_family_info.item_kind = edge_family_info.item_kind;
415 face_connected_edge_family_info.connectivity_name =
"FaceToEdges";
416 face_connected_edge_family_info.nb_connected_items_per_item = vtk_reader.faceNbEdges();
417 face_connected_edge_family_info.connected_items_uids = vtk_reader.faceEdges();
419 auto edge_connected_family_index = 0;
420 auto& edge_connected_cell_family_info = edge_family_info.connected_family_infos[edge_connected_family_index++];
421 edge_connected_cell_family_info.name = cell_family_info.name;
422 edge_connected_cell_family_info.item_kind = cell_family_info.item_kind;
423 edge_connected_cell_family_info.connectivity_name =
"EdgeToCells";
424 edge_connected_cell_family_info.nb_connected_items_per_item = vtk_reader.edgeNbCells();
425 edge_connected_cell_family_info.connected_items_uids = vtk_reader.edgeCells();
427 auto& edge_connected_face_family_info = edge_family_info.connected_family_infos[edge_connected_family_index++];
428 edge_connected_face_family_info.name = face_family_info.name;
429 edge_connected_face_family_info.item_kind = face_family_info.item_kind;
430 edge_connected_face_family_info.connectivity_name =
"EdgeToFaces";
431 edge_connected_face_family_info.nb_connected_items_per_item = vtk_reader.edgeNbFaces();
432 edge_connected_face_family_info.connected_items_uids = vtk_reader.edgeFaces();
434 auto& edge_connected_node_family_info = edge_family_info.connected_family_infos[edge_connected_family_index++];
435 edge_connected_node_family_info.name = node_family_info.name;
436 edge_connected_node_family_info.item_kind = node_family_info.item_kind;
437 edge_connected_node_family_info.connectivity_name =
"EdgeToNodes";
438 edge_connected_node_family_info.nb_connected_items_per_item = vtk_reader.edgeNbNodes();
439 edge_connected_node_family_info.connected_items_uids = vtk_reader.edgeNodes();
441 auto node_connected_family_index = 0;
442 auto& node_connected_cell_family_info = node_family_info.connected_family_infos[node_connected_family_index++];
443 node_connected_cell_family_info.name = cell_family_info.name;
444 node_connected_cell_family_info.item_kind = cell_family_info.item_kind;
445 node_connected_cell_family_info.connectivity_name =
"NodeToCells";
446 node_connected_cell_family_info.nb_connected_items_per_item = vtk_reader.nodeNbCells();
447 node_connected_cell_family_info.connected_items_uids = vtk_reader.nodeCells();
449 auto& node_connected_face_family_info = node_family_info.connected_family_infos[node_connected_family_index++];
450 node_connected_face_family_info.name = face_family_info.name;
451 node_connected_face_family_info.item_kind = face_family_info.item_kind;
452 node_connected_face_family_info.connectivity_name =
"NodeToFaces";
453 node_connected_face_family_info.nb_connected_items_per_item = vtk_reader.nodeNbFaces();
454 node_connected_face_family_info.connected_items_uids = vtk_reader.nodeFaces();
456 auto& node_connected_edge_family_info = node_family_info.connected_family_infos[node_connected_family_index++];
457 node_connected_edge_family_info.name = edge_family_info.name;
458 node_connected_edge_family_info.item_kind = edge_family_info.item_kind;
459 node_connected_edge_family_info.connectivity_name =
"NodeToEdges";
460 node_connected_edge_family_info.nb_connected_items_per_item = vtk_reader.nodeNbEdges();
461 node_connected_edge_family_info.connected_items_uids = vtk_reader.nodeEdges();
463 node_family_info.item_coordinates_variable_name =
"NodeCoord";
464 node_family_info.item_coordinates = vtk_reader.nodeCoords();
470void VtkPolyhedralMeshIOService::
474 OStringStream created_infos_str;
475 created_infos_str() <<
"<?xml version='1.0' ?>\n";
476 created_infos_str() <<
"<infos>";
478 if (
auto* cell_data = reader.cellData(); cell_data) {
481 std::iota(vtk_to_arcane_lids.begin(), vtk_to_arcane_lids.end(), 0);
483 for (
auto array_index = 0; array_index < cell_data->GetNumberOfArrays(); ++array_index) {
484 auto* cell_array = cell_data->GetArray(array_index);
487 if (String name = cell_array->GetName(); name.substring(0, 6) ==
"GROUP_") {
488 _createGroup(cell_array, name.substring(6), mesh, mesh->cellFamily(), vtk_to_arcane_lids.constSpan());
489 created_infos_str() <<
"<cell-group name='" << name.substring(6) <<
"'/>";
492 auto var_info = _createVariable(cell_array, name, mesh, mesh->cellFamily(), arcane_to_vtk_lids);
493 created_infos_str() <<
"<cell-variable name='" << name <<
"' "
494 <<
" data-type='" <<
dataTypeName(var_info.m_type) <<
"' "
495 <<
" is_array='" << std::boolalpha << var_info.is_array <<
"'/>";
497 if (m_print_info_level.print_debug_info) {
499 for (
auto tuple_index = 0; tuple_index < cell_array->GetNumberOfTuples(); ++tuple_index) {
500 for (
auto component_index = 0; component_index < cell_array->GetNumberOfComponents(); ++component_index) {
501 debug(
Trace::High) << cell_array->GetName() <<
"[" << tuple_index <<
"][" << component_index <<
"] = " << cell_array->GetComponent(tuple_index, component_index);
508 if (
auto* point_data = reader.pointData(); point_data) {
511 std::iota(vtk_to_arcane_lids.begin(), vtk_to_arcane_lids.end(), 0);
513 for (
auto array_index = 0; array_index < point_data->GetNumberOfArrays(); ++array_index) {
514 auto* point_array = point_data->GetArray(array_index);
515 if (String name = point_array->GetName(); name.substring(0, 6) ==
"GROUP_") {
516 _createGroup(point_array, name.substring(6), mesh, mesh->nodeFamily(), vtk_to_arcane_lids.constSpan());
517 created_infos_str() <<
"<node-group name='" << name.substring(6) <<
"'/>";
520 auto var_info = _createVariable(point_array, name, mesh, mesh->nodeFamily(), arcane_to_vtk_lids);
521 created_infos_str() <<
"<node-variable name='" << name <<
"' "
522 <<
" data-type='" <<
dataTypeName(var_info.m_type) <<
"' "
523 <<
" is_array='" << std::boolalpha << var_info.is_array <<
"'/>";
525 if (m_print_info_level.print_debug_info) {
527 for (
auto tuple_index = 0; tuple_index < point_array->GetNumberOfTuples(); ++tuple_index) {
528 for (
auto component_index = 0; component_index < point_array->GetNumberOfComponents(); ++component_index) {
529 debug(
Trace::High) << point_array->GetName() <<
"[" << tuple_index <<
"][" << component_index <<
"] = " << point_array->GetComponent(tuple_index, component_index);
536 if (
auto* face_data = reader.faceData(); face_data) {
540 _computeFaceVtkArcaneLidConversion(vtk_to_Arcane_lids, arcane_to_vtk_lids, reader, mesh);
541 for (
auto array_index = 0; array_index < face_data->GetNumberOfArrays(); ++array_index) {
542 auto* face_array = face_data->GetArray(array_index);
543 if (String name = face_array->GetName(); name.substring(0, 6) ==
"GROUP_") {
544 _createGroup(face_array, name.substring(6), mesh, mesh->faceFamily(), vtk_to_Arcane_lids);
545 created_infos_str() <<
"<face-group name='" << name.substring(6) <<
"'/>";
548 auto var_info = _createVariable(face_array, name, mesh, mesh->faceFamily(), arcane_to_vtk_lids);
549 created_infos_str() <<
"<face-variable name='" << name <<
"' "
550 <<
" data-type='" <<
dataTypeName(var_info.m_type) <<
"' "
551 <<
" is_array='" << std::boolalpha << var_info.is_array <<
"'/>";
553 if (m_print_info_level.print_debug_info) {
555 for (
auto tuple_index = 0; tuple_index < face_array->GetNumberOfTuples(); ++tuple_index) {
556 for (
auto component_index = 0; component_index < face_array->GetNumberOfComponents(); ++component_index) {
557 debug(
Trace::High) << face_array->GetName() <<
"[" << tuple_index <<
"][" << component_index <<
"] = " << face_array->GetComponent(tuple_index, component_index);
563 created_infos_str() <<
"</infos>";
566 auto* pm = mesh->parallelMng();
567 if (!reader.isEmpty() && pm->isMasterIO()) {
568 String str = created_infos_str.str();
571 bytes.resize(len + 1);
574 pm->broadcastMemoryBuffer(bytes, pm->masterIORank());
575 if (reader.isEmpty()) {
577 XmlNode doc_node = doc->documentNode();
578 _createEmptyVariablesAndGroups(mesh, doc_node);
585void VtkPolyhedralMeshIOService::
591 if (group_items->GetNumberOfComponents() != 1)
592 fatal() << String::format(
"Impossible de créer un groupe d'éléments {0}. L'information de groupe dans la propriété de données doit être un scalaire", group_name);
593 debug() <<
"Création du groupe " << group_name;
595 arcane_lids.
reserve((
int)group_items->GetNumberOfValues());
596 using GroupDispatcher = vtkArrayDispatch::DispatchByValueType<vtkArrayDispatch::Integrals>;
597 auto group_creator = [&arcane_lids, &vtkToArcaneLid](
auto* array) {
598 vtkIdType numTuples = array->GetNumberOfTuples();
599 vtkDataArrayAccessor<std::remove_pointer_t<
decltype(array)>> array_accessor{ array };
601 for (vtkIdType tupleIdx = 0; tupleIdx < numTuples; ++tupleIdx) {
602 auto value = array_accessor.Get(tupleIdx, 0);
604 arcane_lids.push_back(vtkToArcaneLid[local_id]);
608 if (!GroupDispatcher::Execute(group_items, group_creator))
609 ARCANE_FATAL(
"Impossible de créer le groupe d'éléments {0}. L'information de groupe dans la propriété de données doit être de type entier", group_name);
610 debug() <<
" IDs locaux pour le groupe d'éléments " << group_name <<
" " << arcane_lids;
611 item_family->createGroup(group_name, arcane_lids);
617template <
typename vtkType>
620 using type = vtkType;
642template <
typename T>
using to_arcane_type_t =
typename ToArcaneType<T>::type;
651 if (item_values->GetNumberOfTuples() != item_family->
nbItem())
652 ARCANE_FATAL(
"Impossible de créer la variable {0}, {1} valeurs sont données pour {2} éléments dans la famille {3}",
653 variable_name, item_values->GetNumberOfTuples(), item_family->
nbItem(), item_family->
name());
654 debug() <<
"Création de la variable de maillage " << variable_name;
656 auto variable_creator = [
mesh, variable_name, item_family, arcane_to_vtk_lids,
this, &var_info](
auto* values) {
658 using ValueType =
typename std::remove_pointer_t<
decltype(values)>::ValueType;
659 auto* var =
new ItemVariableScalarRefT<to_arcane_type_t<ValueType>>{ vbi, item_family->itemKind() };
661 vtkDataArrayAccessor<std::remove_pointer_t<
decltype(values)>> values_accessor{ values };
663 (*var)[item] = (to_arcane_type_t<ValueType>)values_accessor.Get(arcane_to_vtk_lids[item.localId()], 0);
665 var_info.m_type = DataTypeTraitsT<to_arcane_type_t<ValueType>>::type();
666 var_info.is_array =
false;
668 auto array_variable_creator = [mesh, variable_name, item_family, arcane_to_vtk_lids,
this, &var_info](
auto* values) {
669 VariableBuildInfo vbi{ mesh, variable_name };
670 using ValueType =
typename std::remove_pointer_t<
decltype(values)>::ValueType;
671 auto* var =
new ItemVariableArrayRefT<to_arcane_type_t<ValueType>>{ vbi, item_family->itemKind() };
673 vtkDataArrayAccessor<std::remove_pointer_t<
decltype(values)>> values_accessor{ values };
674 var->resize(values->GetNumberOfComponents());
677 for (
auto& var_value : (*var)[item]) {
678 var_value = (to_arcane_type_t<ValueType>)values_accessor.Get(arcane_to_vtk_lids[item.localId()], index++);
681 var_info.m_type = DataTypeTraitsT<to_arcane_type_t<ValueType>>::type();
682 var_info.is_array =
true;
685 using ValueTypes = vtkTypeList_Create_6(
double,
float,
int,
long,
long long,
short);
686 using ArrayDispatcher = vtkArrayDispatch::DispatchByValueType<ValueTypes>;
688 bool is_variable_created =
false;
689 if (item_values->GetNumberOfComponents() == 1) {
690 is_variable_created = ArrayDispatcher::Execute(item_values, variable_creator);
694 is_variable_created = ArrayDispatcher::Execute(item_values, array_variable_creator);
696 if (!is_variable_created)
697 ARCANE_FATAL(
"Impossible de créer la variable {0}, son type de données n'est pas pris en charge. Seuls les types réels et entiers sont pris en charge", variable_name);
704void VtkPolyhedralMeshIOService::
707 auto face_nodes_unique_ids = reader.faceNodesInFaceMesh();
708 auto face_nb_nodes = reader.faceNbNodesInFaceMesh();
709 auto current_face_index = 0;
710 auto current_face_index_in_face_nodes = 0;
712 mesh->nodeFamily()->itemsUniqueIdToLocalId(face_nodes_local_ids, face_nodes_unique_ids);
713 for (
auto current_face_nb_node : face_nb_nodes) {
714 auto current_face_nodes = face_nodes_local_ids.subConstView(current_face_index_in_face_nodes, current_face_nb_node);
715 current_face_index_in_face_nodes += current_face_nb_node;
716 Node face_first_node{ mesh->nodeFamily()->view()[current_face_nodes[0]] };
717 face_vtk_to_arcane_lids[current_face_index] = MeshUtils::getFaceFromNodesLocalId(face_first_node, current_face_nodes).localId();
718 ++current_face_index;
721 for (
auto arcane_lid : face_vtk_to_arcane_lids) {
722 arcane_to_vtk_lids[arcane_lid] = vtk_lid;
730template <
template <
class>
class VariableRootType>
733 bool has_error =
false;
736 ARCANE_FATAL(
"Nom de type de données invalide {0} pour la création de variable dans VtkPolyhedralMeshIOService", var_data_type_name);
738 switch (var_data_type) {
749 ARCANE_FATAL(
"Gère uniquement DT_Int32, DT_Int64, DT_Real dans VtkPolyhedralMeshIOService");
756template <
template <
class>
class VariableRootType,
template <
class>
class ArrayVariableRootType>
757void VtkPolyhedralMeshIOService::
760 ARCANE_CHECK_PTR(mesh);
762 for (XmlNode xnode : item_variables_node) {
763 String name = xnode.attrValue(
"name");
764 debug() <<
"Création de la variable de maillage : " << name;
765 String data_type_name = xnode.attrValue(
"data-type");
766 bool is_array = xnode.attrValue(
"is_array") ==
"true";
767 VariableRef* var =
nullptr;
769 var = _createVar<ArrayVariableRootType>(mesh, name, data_type_name, item_kind);
772 var = _createVar<VariableRootType>(mesh, name, data_type_name, item_kind);
774 mesh->variableMng()->_internalApi()->addAutoDestroyVariable(var);
782void VtkPolyhedralMeshIOService::
786 for (XmlNode xnode : groups_node) {
787 String name = xnode.attrValue(
"name");
788 info() <<
"Construction du groupe : " << name;
789 item_family->createGroup(name);
796void VtkPolyhedralMeshIOService::
799 ARCANE_CHECK_PTR(mesh);
800 auto document_node = variable_and_group_info.documentElement();
801 _createEmptyVariables<ItemVariableScalarRefT, ItemVariableArrayRefT>(mesh, document_node.children(
"cell-variable"),
IK_Cell);
802 _createEmptyVariables<ItemVariableScalarRefT, ItemVariableArrayRefT>(mesh, document_node.children(
"node-variable"),
IK_Node);
803 _createEmptyVariables<ItemVariableScalarRefT, ItemVariableArrayRefT>(mesh, document_node.children(
"face-variable"),
IK_Face);
805 _createEmptyGroups(mesh, document_node.children(
"cell-group"), mesh->itemFamily(
IK_Cell));
806 _createEmptyGroups(mesh, document_node.children(
"node-group"), mesh->itemFamily(
IK_Node));
807 _createEmptyGroups(mesh, document_node.children(
"face-group"), mesh->itemFamily(
IK_Face));
813VtkPolyhedralMeshIOService::VtkReader::
815: m_filename{ filename }
816, m_print_info_level{ print_info_level }
820 if (filename.empty()) {
821 m_read_status.failure =
true;
822 m_read_status.failure_message =
"le nom de fichier pour le maillage vtk polyédrique est vide.";
825 if (filename.endsWith(
"vtk"))
826 _readPlainTextVtkGrid(filename);
827 else if (filename.endsWith(
"vtu"))
828 _readXlmVtkGrid(filename);
830 m_read_status.failure =
true;
831 m_read_status.failure_message = String::format(
"Extension vtk non prise en charge pour le fichier {0}. Les extensions vtk prises en charge pour les maillages polyédriques sont {1}",
832 filename, VtkReader::supportedVtkExtensions());
836 m_read_status.failure =
true;
837 m_read_status.failure_message = String::format(
"Impossible de lire le fichier vtk polyédrique {0}. La grille Vtk n'a pas été créée.", filename);
840 if (m_vtk_grid->GetNumberOfCells() == 0) {
841 m_read_status.failure =
true;
842 m_read_status.failure_message = String::format(
"Impossible de lire le fichier vtk polyédrique {0}. Aucune maille n'a été trouvée.", filename);
845 if (!m_vtk_grid->GetFaces()) {
846 m_read_status.failure =
true;
847 m_read_status.failure_message = String::format(
"Le fichier vtk de maillage donné {0} n'est pas un maillage polyédrique, impossible de le lire", filename);
851 m_cell_data = m_vtk_grid->GetCellData();
852 m_point_data = m_vtk_grid->GetPointData();
855 String faces_filename = m_filename +
"faces.vtk";
856 std::ifstream ifile(faces_filename.localstr());
858 _readPlainTextVtkFaceGrid(faces_filename);
861 faces_filename = m_filename +
"faces.vtp";
862 ifile = std::ifstream{ faces_filename.localstr() };
864 _readXmlVtkFaceGrid(faces_filename);
869 faces_filename.split(faces_filename_and_extension,
'.');
872 m_read_status.info_message = String::format(
"Information : aucune maille de face fournie {0}{1} (.vtk ou .vtp) pour définir des variables ou des groupes de face.",
873 faces_filename_and_extension[0],
874 faces_filename_and_extension[1]);
877 if (m_vtk_face_grid) {
878 if (m_vtk_face_grid->GetNumberOfCells() == 0) {
879 m_read_status.failure =
true;
880 m_read_status.failure_message = m_read_status.failure_message + String::format(
" Erreur lors de la lecture des informations de face pour les groupes dans le fichier de maillage {0} ", faces_filename);
883 m_face_data = m_vtk_face_grid->GetCellData();
884 m_poly_data = m_vtk_face_grid->GetPolys();
888 m_read_status.failure =
true;
889 m_read_status.failure_message = m_read_status.failure_message + String::format(
"Les données de face n'ont pas pu être construites à partir du fichier {0}{1} (.vtk ou .vtu).", faces_filename_and_extension[0], faces_filename_and_extension[1]);
893 if (m_print_info_level.print_mesh_info)
905 if (m_cell_uids.empty()) {
907 m_cell_uids.reserve(m_vtk_grid->GetNumberOfCells());
908 m_cell_nb_nodes.reserve(m_vtk_grid->GetNumberOfCells());
909 m_cell_node_uids.reserve(10 * m_vtk_grid->GetNumberOfCells());
910 auto* cell_iter = m_vtk_grid->NewCellIterator();
911 cell_iter->InitTraversal();
912 while (!cell_iter->IsDoneWithTraversal()) {
913 m_cell_uids.push_back(cell_iter->GetCellId());
914 m_cell_nb_nodes.push_back(
Integer(cell_iter->GetNumberOfPoints()));
915 ArrayView<vtkIdType> cell_nodes{
Integer(cell_iter->GetNumberOfPoints()), cell_iter->GetPointIds()->GetPointer(0) };
916 std::for_each(cell_nodes.begin(), cell_nodes.end(), [
this](
auto uid) { this->m_cell_node_uids.push_back(uid); });
917 cell_iter->GoToNextCell();
931 if (m_node_uids.empty()) {
933 auto nb_nodes = m_vtk_grid->GetNumberOfPoints();
934 m_node_uids.resize(nb_nodes);
935 m_node_nb_cells.resize(nb_nodes);
936 m_node_cell_uids.reserve(8 * nb_nodes);
937 m_node_uid_to_index.resize(nb_nodes);
938 for (
int node_index = 0; node_index < nb_nodes; ++node_index) {
939 Int64 node_uid = node_index;
940 m_node_uids[node_index] = node_uid;
941 auto cell_nodes = vtkIdList::New();
942 m_vtk_grid->GetPointCells(node_index, cell_nodes);
943 Int64Span cell_nodes_view((
Int64*)cell_nodes->GetPointer(0), cell_nodes->GetNumberOfIds());
944 m_node_cell_uids.addRange(cell_nodes_view);
945 m_node_nb_cells[node_index] = (
Int32)cell_nodes->GetNumberOfIds();
948 m_node_uid_to_index[node_uid] = node_index;
965 if (!m_face_uids.empty())
968 auto* cell_iter = m_vtk_grid->NewCellIterator();
969 cell_iter->InitTraversal();
970 vtkIdType nb_face_estimation = 0;
971 while (!cell_iter->IsDoneWithTraversal()) {
972 vtkIdType cell_nb_faces = 0;
973 vtkIdType_generic* points{
nullptr };
974 m_vtk_grid->GetFaceStream(cell_iter->GetCellId(), cell_nb_faces, points);
975 nb_face_estimation += cell_nb_faces;
976 cell_iter->GoToNextCell();
978 m_face_uids.reserve(nb_face_estimation);
979 auto const* faces = m_vtk_grid->GetFaces();
984 ARCANE_FATAL(
"Le maillage {0} n'est pas polyédrique : les faces ne sont pas définies", m_filename);
987 auto face_info_size = faces->GetNumberOfValues();
988 m_face_node_uids.reserve(face_info_size);
989 m_face_nb_nodes.reserve(nb_face_estimation);
990 m_face_cell_uids.reserve(2 * nb_face_estimation);
991 m_face_nb_cells.reserve(nb_face_estimation);
992 m_cell_face_uids.reserve(8 * m_cell_uids.size());
993 m_cell_nb_faces.resize(m_cell_uids.size(), 0);
994 m_cell_face_indexes.resize(m_cell_uids.size(), -1);
995 m_face_uid_indexes.resize(2 * nb_face_estimation, -1);
997 current_face_nodes.
reserve(10);
998 sorted_current_face_nodes.reserve(10);
999 UniqueArray<UniqueArray<Int64>> node_faces(m_node_uids.size());
1000 UniqueArray<Int32> face_offsets;
1001 face_offsets.reserve(nb_face_estimation);
1002 face_offsets.push_back(0);
1003 FaceUidToIndexMap face_uid_to_index;
1004 face_uid_to_index.reserve(nb_face_estimation);
1005 auto cell_index = 0;
1006 auto cell_face_index = 0;
1007 auto global_face_index = 0;
1008 auto face_uid_index = 0;
1009 for (
int face_info_index = 0; face_info_index < face_info_size; cell_index++) {
1010 auto current_cell_nb_faces =
Int32(faces->GetValue(face_info_index++));
1011 m_cell_face_indexes[m_cell_uids[cell_index]] = cell_face_index;
1012 for (
auto face_index = 0; face_index < current_cell_nb_faces; ++face_index, ++global_face_index) {
1013 auto current_face_nb_nodes =
Int32(faces->GetValue(face_info_index++));
1014 m_cell_nb_faces[m_cell_uids[cell_index]] += 1;
1015 for (
int node_index = 0; node_index < current_face_nb_nodes; ++node_index) {
1016 current_face_nodes.push_back(faces->GetValue(face_info_index++));
1018 sorted_current_face_nodes.resize(current_face_nodes.size());
1019 auto is_front_cell = mesh_utils::reorderNodesOfFace(current_face_nodes, sorted_current_face_nodes);
1020 auto [is_face_found, existing_face_index] = _findFace(sorted_current_face_nodes, node_faces,
1021 m_node_uid_to_index, m_face_nb_nodes,
1022 face_uid_to_index, face_offsets, m_face_node_uids);
1023 if (!is_face_found) {
1024 for (
auto node_uid : current_face_nodes) {
1025 node_faces[m_node_uid_to_index[node_uid]].push_back(face_uid);
1027 m_cell_face_uids.push_back(face_uid);
1028 m_face_uids.push_back(face_uid);
1029 m_face_nb_nodes.push_back(current_face_nb_nodes);
1030 m_face_node_uids.addRange(sorted_current_face_nodes);
1031 m_face_nb_cells.push_back(1);
1032 m_face_uid_indexes[global_face_index] = face_uid_index;
1033 face_uid_to_index.push_back(face_uid_index);
1034 auto previous_offset = face_offsets.back();
1035 face_offsets.push_back(previous_offset + sorted_current_face_nodes.size());
1038 if (is_front_cell) {
1039 m_face_cell_uids.push_back(NULL_ITEM_UNIQUE_ID);
1040 m_face_cell_uids.push_back(m_cell_uids[cell_index]);
1043 m_face_cell_uids.push_back(m_cell_uids[cell_index]);
1044 m_face_cell_uids.push_back(NULL_ITEM_UNIQUE_ID);
1048 m_cell_face_uids.push_back(m_face_uids[existing_face_index]);
1049 m_face_nb_cells[existing_face_index] += 1;
1050 m_face_uid_indexes[global_face_index] = existing_face_index;
1052 if (is_front_cell) {
1053 if (m_face_cell_uids[2 * existing_face_index + 1] != NULL_ITEM_UNIQUE_ID) {
1054 ARCANE_FATAL(
"Problème d'orientation de face, UID de face {0}, nœuds {1}, même orientation dans la maille {2} et {3}. Changez le fichier de maillage.",
1055 m_face_uids[existing_face_index],
1057 m_face_cell_uids[2 * existing_face_index + 1],
1058 m_cell_uids[cell_index]);
1060 m_face_cell_uids[2 * existing_face_index + 1] = m_cell_uids[cell_index];
1063 if (m_face_cell_uids[2 * existing_face_index] != NULL_ITEM_UNIQUE_ID) {
1064 ARCANE_FATAL(
"Problème d'orientation de face, UID de face {0}, nœuds {1}, même orientation dans la maille {2} et {3}. Changez le fichier de maillage.",
1065 m_face_uids[existing_face_index],
1067 m_face_cell_uids[2 * existing_face_index],
1068 m_cell_uids[cell_index]);
1070 m_face_cell_uids[2 * existing_face_index] = m_cell_uids[cell_index];
1073 current_face_nodes.clear();
1074 sorted_current_face_nodes.clear();
1076 cell_face_index += m_cell_nb_faces[m_cell_uids[cell_index]];
1079 m_node_nb_faces.resize(m_node_uids.size(), 0);
1080 _flattenConnectivity(node_faces.constSpan(), m_node_nb_faces, m_node_face_uids);
1082 if (m_print_info_level.print_debug_info) {
1083 std::cout <<
"================NŒUDS DE FACE ==============" << std::endl;
1084 std::copy(m_face_node_uids.begin(), m_face_node_uids.end(), std::ostream_iterator<Int64>(std::cout,
" "));
1085 std::cout << std::endl;
1086 std::copy(m_face_nb_nodes.begin(), m_face_nb_nodes.end(), std::ostream_iterator<Int64>(std::cout,
" "));
1087 std::cout << std::endl;
1088 std::copy(m_cell_face_indexes.begin(), m_cell_face_indexes.end(), std::ostream_iterator<Int64>(std::cout,
" "));
1089 std::cout << std::endl;
1103 if (!m_edge_uids.empty())
1109 m_edge_uids.reserve(2 * m_vtk_grid->GetNumberOfPoints());
1110 auto const* faces = m_vtk_grid->GetFaces();
1115 ARCANE_FATAL(
"Le maillage {0} n'est pas polyédrique : les faces ne sont pas définies", m_filename);
1118 auto nb_edge_estimation = 2 * m_edge_uids.capacity();
1119 m_edge_node_uids.reserve(nb_edge_estimation);
1120 auto face_info_size = faces->GetNumberOfValues();
1121 auto cell_index = 0;
1122 auto global_face_index = 0;
1123 auto new_edge_index = 0;
1124 UniqueArray<std::set<Int64>> edge_cells;
1125 UniqueArray<Int64UniqueArray> edge_faces;
1126 edge_cells.reserve(m_edge_uids.capacity());
1127 edge_faces.reserve(m_edge_uids.capacity());
1128 m_cell_nb_edges.resize(m_cell_uids.size(), 0);
1129 m_cell_edge_uids.reserve(20 * m_cell_uids.size());
1130 UniqueArray<std::set<Int64>> face_edges;
1131 face_edges.resize(m_face_uids.size());
1132 UniqueArray<std::set<Int64>> cell_edges;
1133 cell_edges.resize(m_cell_uids.size());
1134 UniqueArray<Int64UniqueArray> node_edges;
1135 node_edges.resize(m_node_uids.size());
1136 EdgeUidToIndexMap edge_uid_to_index;
1137 edge_uid_to_index.reserve(nb_edge_estimation);
1139 edge_offsets.
reserve(nb_edge_estimation);
1140 edge_offsets.push_back(0);
1141 m_edge_nb_nodes.reserve(nb_edge_estimation);
1142 for (
int face_info_index = 0; face_info_index < face_info_size; ++cell_index) {
1143 auto current_cell_nb_faces =
Int32(faces->GetValue(face_info_index++));
1144 for (
auto face_index = 0; face_index < current_cell_nb_faces; ++face_index, ++global_face_index) {
1145 auto current_face_nb_nodes =
Int32(faces->GetValue(face_info_index++));
1146 auto first_face_node_uid =
Int32(faces->GetValue(face_info_index));
1147 UniqueArray<Int64> current_edge(2), sorted_edge(2);
1148 for (
int node_index = 0; node_index < current_face_nb_nodes - 1; ++node_index) {
1149 current_edge = UniqueArray<Int64>{ faces->GetValue(face_info_index++), faces->GetValue(face_info_index) };
1150 mesh_utils::reorderNodesOfFace(current_edge, sorted_edge);
1151 auto [is_edge_found, existing_edge_index] = _findFace(sorted_edge, node_edges,
1152 m_node_uid_to_index,
1154 edge_uid_to_index, edge_offsets, m_edge_node_uids);
1155 if (!is_edge_found) {
1156 m_cell_nb_edges[cell_index] += 1;
1157 face_edges[m_face_uid_indexes[global_face_index]].insert(edge_uid);
1158 cell_edges[cell_index].insert(edge_uid);
1159 for (
auto node : current_edge) {
1160 node_edges[node].push_back(edge_uid);
1162 edge_cells.push_back(std::set{ m_cell_uids[cell_index] });
1163 edge_faces.push_back(
Int64UniqueArray{ m_cell_face_uids[m_cell_face_indexes[cell_index] + face_index] });
1164 m_edge_uids.push_back(edge_uid++);
1165 m_edge_node_uids.addRange(sorted_edge);
1166 edge_uid_to_index.push_back(new_edge_index);
1167 auto current_offset = edge_offsets.back();
1168 edge_offsets.push_back(current_offset + 2);
1169 m_edge_nb_nodes.push_back(2);
1173 edge_cells[existing_edge_index].insert(m_cell_uids[cell_index]);
1174 edge_faces[existing_edge_index].push_back(m_cell_face_uids[m_cell_face_indexes[cell_index] + face_index]);
1175 face_edges[m_face_uid_indexes[global_face_index]].insert(m_edge_uids[existing_edge_index]);
1176 cell_edges[cell_index].insert(m_edge_uids[existing_edge_index]);
1179 current_edge = UniqueArray<Int64>{ faces->GetValue(face_info_index++), first_face_node_uid };
1180 mesh_utils::reorderNodesOfFace(current_edge, sorted_edge);
1181 auto [is_edge_found, existing_edge_index] = _findFace(sorted_edge, node_edges,
1182 m_node_uid_to_index,
1184 edge_uid_to_index, edge_offsets, m_edge_node_uids);
1185 if (!is_edge_found) {
1186 m_cell_nb_edges[cell_index] += 1;
1187 edge_cells.push_back(std::set{ m_cell_uids[cell_index] });
1188 edge_faces.push_back(
Int64UniqueArray{ m_cell_face_uids[m_cell_face_indexes[cell_index] + face_index] });
1189 face_edges[m_face_uid_indexes[global_face_index]].insert(edge_uid);
1190 cell_edges[cell_index].insert(edge_uid);
1191 for (
auto node : current_edge) {
1192 node_edges[node].push_back(edge_uid);
1194 m_edge_uids.push_back(edge_uid++);
1195 m_edge_node_uids.addRange(sorted_edge);
1196 edge_uid_to_index.push_back(new_edge_index);
1197 auto current_offset = edge_offsets.back();
1198 edge_offsets.push_back(current_offset + 2);
1199 m_edge_nb_nodes.push_back(2);
1203 edge_cells[existing_edge_index].insert(m_cell_uids[cell_index]);
1204 edge_faces[existing_edge_index].push_back(m_cell_face_uids[m_cell_face_indexes[cell_index] + face_index]);
1205 face_edges[m_face_uid_indexes[global_face_index]].insert(m_edge_uids[existing_edge_index]);
1206 cell_edges[cell_index].insert(m_edge_uids[existing_edge_index]);
1211 m_edge_nb_cells.resize(m_edge_uids.size(), 0);
1212 _flattenConnectivity(edge_cells.constSpan(), m_edge_nb_cells, m_edge_cell_uids);
1215 m_edge_nb_faces.resize(m_edge_uids.size(), 0);
1216 _flattenConnectivity(edge_faces.constSpan(), m_edge_nb_faces, m_edge_face_uids);
1219 m_face_nb_edges.resize(m_face_uids.size(), 0);
1220 _flattenConnectivity(face_edges.constSpan(), m_face_nb_edges, m_face_edge_uids);
1223 m_cell_nb_edges.resize(m_cell_uids.size(), 0);
1224 _flattenConnectivity(cell_edges, m_cell_nb_edges, m_cell_edge_uids);
1227 m_node_nb_edges.resize(m_node_uids.size(), 0);
1228 _flattenConnectivity(node_edges, m_node_nb_edges, m_node_edge_uids);
1230 if (m_print_info_level.print_debug_info) {
1231 std::cout <<
"================EDGE NODES ==============" << std::endl;
1232 std::copy(m_edge_node_uids.begin(), m_edge_node_uids.end(), std::ostream_iterator<Int64>(std::cout,
" "));
1233 std::cout << std::endl;
1234 std::cout <<
"================FACE EDGES ==============" << std::endl;
1235 std::copy(m_face_nb_edges.begin(), m_face_nb_edges.end(), std::ostream_iterator<Int32>(std::cout,
" "));
1236 std::cout << std::endl;
1237 std::copy(m_face_edge_uids.begin(), m_face_edge_uids.end(), std::ostream_iterator<Int64>(std::cout,
" "));
1238 std::cout << std::endl;
1239 std::cout <<
"================CELL EDGES ==============" << std::endl;
1240 std::copy(m_cell_nb_edges.begin(), m_cell_nb_edges.end(), std::ostream_iterator<Int32>(std::cout,
" "));
1241 std::cout << std::endl;
1242 std::copy(m_cell_edge_uids.begin(), m_cell_edge_uids.end(), std::ostream_iterator<Int64>(std::cout,
" "));
1243 std::cout << std::endl;
1251std::pair<bool, Int32> VtkPolyhedralMeshIOService::VtkReader::
1253 const UniqueArray<Int64UniqueArray>& node_face_uids,
1254 const NodeUidToIndexMap& node_uid_to_index,
1256 const FaceUidToIndexMap& face_uid_to_index,
1257 const UniqueArray<Int32>& face_offsets,
1260 auto first_node_uid = sorted_face_nodes[0];
1261 auto first_node_index = node_uid_to_index[first_node_uid];
1263 for (
auto face_uid : node_face_uids[first_node_index]) {
1264 auto face_index = face_uid_to_index[face_uid];
1265 auto face_offset = face_offsets[face_index];
1266 auto face_nb_node = face_nb_nodes[face_index];
1267 if (face_nb_node == sorted_face_nodes.size()) {
1268 bool is_same_face =
true;
1269 for (
auto index = 0; index < face_nb_node; ++index) {
1270 if (sorted_face_nodes[index] != face_node_uids[face_offset + index]) {
1271 is_same_face =
false;
1275 return {
true, face_index };
1278 return {
false, -1 };
1284Integer VtkPolyhedralMeshIOService::VtkReader::
1287 if (m_node_uids.empty())
1289 return m_node_uids.size();
1298 if (m_cell_node_uids.empty())
1300 return m_cell_node_uids;
1309 if (m_cell_nb_nodes.empty())
1311 return m_cell_nb_nodes;
1320 if (m_face_node_uids.empty())
1322 return m_face_node_uids;
1331 if (m_face_nb_nodes.empty())
1333 return m_face_nb_nodes;
1340faceNodesInFaceMesh()
1342 if (m_face_node_uids_in_face_mesh.empty())
1343 _readfaceNodesInFaceMesh();
1344 return m_face_node_uids_in_face_mesh;
1351faceNbNodesInFaceMesh()
1353 if (m_face_nb_nodes_in_face_mesh.empty())
1354 _readfaceNodesInFaceMesh();
1355 return m_face_nb_nodes_in_face_mesh;
1364 if (m_edge_node_uids.empty())
1366 return m_edge_nb_nodes;
1375 if (m_edge_node_uids.empty())
1377 return m_edge_node_uids;
1386 if (m_face_cell_uids.empty())
1389 if (m_print_info_level.print_debug_info) {
1390 std::cout <<
"=================FACE CELLS================="
1392 std::copy(m_face_cell_uids.begin(), m_face_cell_uids.end(), std::ostream_iterator<Int64>(std::cout,
" "));
1394 std::cout <<
"=================END FACE CELLS================="
1397 return m_face_cell_uids;
1406 if (m_face_nb_cells.empty())
1408 return m_face_nb_cells;
1417 if (m_edge_nb_cells.empty())
1419 return m_edge_nb_cells;
1428 if (m_edge_cell_uids.empty())
1430 return m_edge_cell_uids;
1439 if (m_cell_nb_faces.empty())
1441 return m_cell_nb_faces;
1450 if (m_cell_face_uids.empty())
1452 return m_cell_face_uids;
1461 if (m_edge_nb_faces.empty())
1463 return m_edge_nb_faces;
1472 if (m_edge_face_uids.empty())
1474 return m_edge_face_uids;
1483 if (m_cell_nb_edges.empty())
1485 return m_cell_nb_edges;
1494 if (m_cell_edge_uids.empty())
1496 return m_cell_edge_uids;
1505 if (m_face_nb_edges.empty())
1507 return m_face_nb_edges;
1516 if (m_face_edge_uids.empty())
1518 return m_face_edge_uids;
1524template <
typename Connectivity2DArray>
1525void VtkPolyhedralMeshIOService::VtkReader::
1526_flattenConnectivity(Connectivity2DArray connected_item_2darray,
1527 Int32Span nb_connected_item_per_source_item,
1531 std::transform(connected_item_2darray.begin(), connected_item_2darray.end(), nb_connected_item_per_source_item.begin(), [](
auto const& connected_items) {
1532 return connected_items.size();
1535 connected_item_array.reserve(std::accumulate(nb_connected_item_per_source_item.begin(), nb_connected_item_per_source_item.end(), 0));
1536 std::for_each(connected_item_2darray.begin(), connected_item_2darray.end(), [&connected_item_array](
auto const& connected_items) {
1537 for (auto const& connected_item : connected_items) {
1538 connected_item_array.push_back(connected_item);
1549 if (m_node_nb_cells.empty())
1551 return m_node_nb_cells;
1560 if (m_node_cell_uids.empty())
1562 return m_node_cell_uids;
1571 if (m_node_nb_faces.empty())
1573 return m_node_nb_faces;
1582 if (m_node_face_uids.empty())
1584 return m_node_face_uids;
1593 if (m_node_nb_edges.empty())
1595 return m_node_nb_edges;
1604 if (m_node_edge_uids.empty())
1606 return m_node_edge_uids;
1616 return m_node_coordinates;
1617 if (m_node_coordinates.empty()) {
1619 auto point_coords = m_vtk_grid->GetPoints()->GetData();
1620 if (m_print_info_level.print_debug_info) {
1621 std::cout <<
"======= Point COORDS ====" << std::endl;
1622 std::ostringstream oss;
1623 point_coords->PrintSelf(oss, vtkIndent{ 2 });
1624 std::cout << oss.str() << std::endl;
1626 auto nb_nodes = m_vtk_grid->GetNumberOfPoints();
1627 for (
int i = 0; i < nb_nodes; ++i) {
1628 if (m_print_info_level.print_debug_info) {
1629 std::cout <<
"==========current point coordinates : ( ";
1630 std::cout << *(point_coords->GetTuple(i)) <<
" , ";
1631 std::cout << *(point_coords->GetTuple(i) + 1) <<
" , ";
1632 std::cout << *(point_coords->GetTuple(i) + 2) <<
" ) ===" << std::endl;
1634 m_node_coordinates.add({ *(point_coords->GetTuple(i)),
1635 *(point_coords->GetTuple(i) + 1),
1636 *(point_coords->GetTuple(i) + 2) });
1639 return m_node_coordinates;
1645vtkCellData* VtkPolyhedralMeshIOService::VtkReader::
1654vtkPointData* VtkPolyhedralMeshIOService::VtkReader::
1657 return m_point_data;
1663void VtkPolyhedralMeshIOService::VtkReader::
1664_printMeshInfos()
const
1667 std::cout <<
"-- VTK GRID READ "
1668 <<
" NB CELLS " << m_vtk_grid->GetNumberOfCells() << std::endl;
1670 auto* cell_iter = m_vtk_grid->vtkDataSet::NewCellIterator();
1671 cell_iter->InitTraversal();
1672 vtkIdType_generic* cell_faces{
nullptr };
1673 vtkIdType nb_faces = 0;
1674 while (!cell_iter->IsDoneWithTraversal()) {
1675 std::cout <<
"---- visiting cell id " << cell_iter->GetCellId() << std::endl;
1676 std::cout <<
"---- cell number of faces " << cell_iter->GetNumberOfFaces() << std::endl;
1677 std::cout <<
"---- cell number of points " << cell_iter->GetNumberOfPoints() << std::endl;
1678 m_vtk_grid->GetFaceStream(cell_iter->GetCellId(), nb_faces, cell_faces);
1679 for (
auto iface = 0; iface < nb_faces; ++iface) {
1680 auto face_nb_nodes = *cell_faces++;
1681 std::cout <<
"---- has face with " << face_nb_nodes <<
" nodes. Node ids : ";
1682 for (
int inode = 0; inode < face_nb_nodes; ++inode) {
1683 std::cout << *cell_faces++ <<
" ";
1685 std::cout << std::endl;
1687 cell_iter->GoToNextCell();
1694vtkCellData* VtkPolyhedralMeshIOService::VtkReader::faceData()
1704void VtkPolyhedralMeshIOService::VtkReader::
1705_readPlainTextVtkGrid(
const String& filename)
1707 m_vtk_grid_reader->SetFileName(filename.localstr());
1708 m_vtk_grid_reader->ReadAllScalarsOn();
1709 m_vtk_grid_reader->Update();
1710 m_vtk_grid = m_vtk_grid_reader->GetOutput();
1716void VtkPolyhedralMeshIOService::VtkReader::
1717_readXlmVtkGrid(
const String& filename)
1719 m_vtk_xml_grid_reader->SetFileName(filename.localstr());
1720 m_vtk_xml_grid_reader->Update();
1721 m_vtk_grid = m_vtk_xml_grid_reader->GetOutput();
1727void VtkPolyhedralMeshIOService::VtkReader::
1728_readPlainTextVtkFaceGrid(
const String& faces_filename)
1730 m_vtk_face_grid_reader->SetFileName(faces_filename.localstr());
1731 m_vtk_face_grid_reader->ReadAllScalarsOn();
1732 m_vtk_face_grid_reader->Update();
1733 m_vtk_face_grid = m_vtk_face_grid_reader->GetOutput();
1739void VtkPolyhedralMeshIOService::VtkReader::
1740_readXmlVtkFaceGrid(
const String& faces_filename)
1742 m_vtk_xml_face_grid_reader->SetFileName(faces_filename.localstr());
1743 m_vtk_xml_face_grid_reader->Update();
1744 m_vtk_face_grid = m_vtk_xml_face_grid_reader->GetOutput();
1750void VtkPolyhedralMeshIOService::VtkReader::
1751_readfaceNodesInFaceMesh()
1753 m_face_nb_nodes_in_face_mesh.resize(m_poly_data->GetNumberOfCells());
1754 m_face_node_uids_in_face_mesh.reserve(m_poly_data->GetNumberOfCells() * m_poly_data->GetMaxCellSize());
1755 m_poly_data->InitTraversal();
1756 vtkIdType face_nb_nodes;
1757 vtkIdType_generic* face_nodes;
1759 auto face_nb_node_index = 0;
1762 current_face_node_uids.
reserve(m_poly_data->GetMaxCellSize());
1763 reordered_current_face_node_uids.reserve(m_poly_data->GetMaxCellSize());
1765 while (m_poly_data->GetNextCell(face_nb_nodes, face_nodes)) {
1766 m_face_nb_nodes_in_face_mesh[face_nb_node_index] = face_nb_nodes;
1767 ConstArrayView<vtkIdType> face_nodes_view(face_nb_nodes, face_nodes);
1768 current_face_node_uids.resize(face_nb_nodes);
1769 reordered_current_face_node_uids.resize(face_nb_nodes);
1770 std::copy(face_nodes_view.begin(), face_nodes_view.end(), current_face_node_uids.begin());
1771 MeshUtils::reorderNodesOfFace(current_face_node_uids, reordered_current_face_node_uids);
1772 std::copy(reordered_current_face_node_uids.begin(), reordered_current_face_node_uids.end(), std::back_inserter(m_face_node_uids_in_face_mesh));
1773 ++face_nb_node_index;
1779void VtkPolyhedralMeshIOService::VtkReader::
1780_checkVtkGrid()
const
1783 ARCANE_FATAL(
"Polyhedral vtk grid not loaded. Cannot continue.");
Fichier de configuration d'Arcane.
#define ARCANE_CHECK_POINTER(ptr)
Macro retournant le pointeur ptr s'il est non nul ou lancant une exception s'il est nul.
#define ARCANE_FATAL(...)
Macro envoyant une exception FatalErrorException.
Déclarations des types généraux de Arcane.
Fonctions utilitaires sur le maillage.
Ce fichier contient les différentes fabriques de services et macro pour enregistrer les services.
#define ARCANE_SERVICE_INTERFACE(ainterface)
Macro pour déclarer une interface lors de l'enregistrement d'un service.
Gestion des références à une classe C++.
Generation de la classe de base du Service.
CaseOptionsVtkPolyhedralMeshIO * options() const
Options du jeu de données du service.
ArcaneVtkPolyhedralMeshIOObject(const Arcane::ServiceBuildInfo &sbi)
Constructeur.
void reserve(Int64 new_capacity)
Réserve le mémoire pour new_capacity éléments.
Informations nécessaires pour la lecture d'un fichier de maillage.
Interface d'une famille d'entités.
virtual String name() const =0
Nom de la famille.
virtual Integer nbItem() const =0
Nombre d'entités.
virtual String name() const =0
Nom du maillage.
Interface d'un service de création/lecture du maillage.
virtual IVariableMng * variableMng() const =0
Gestionnaire de variable associé
Interface du gestionnaire de traces.
virtual void addAutoDestroyVariable(VariableRef *var)=0
Ajoute la variable à la liste des variables qui sont conservées jusqu'à la fin de l'exécution.
virtual IVariableMngInternal * _internalApi()=0
API interne à Arcane.
static IXmlDocumentHolder * loadFromBuffer(Span< const Byte > buffer, const String &name, ITraceMng *tm)
Charge un document XML.
Paramètres nécessaires à la construction d'un maillage.
MeshBuildInfo & addNeedPartitioning(bool v)
Indique si le générateur nécessite d'appeler un partitionneur.
MeshBuildInfo & addMeshKind(const MeshKind &v)
Positionne les caractéristiques du maillage.
MeshBuildInfo & addFactoryName(const String &factory_name)
Positionne le nom de la fabrique pour créer ce maillage.
Caractéristiques d'un maillage.
Référence à une instance.
Structure contenant les informations pour créer un service.
Chaîne de caractères unicode.
TraceAccessor(ITraceMng *m)
Construit un accesseur via le gestionnaire de trace m.
TraceMessageDbg debug(Trace::eDebugLevel=Trace::Medium) const
Flot pour un message de debug.
TraceMessage fatal() const
Flot pour un message d'erreur fatale.
TraceMessage info() const
Flot pour un message d'information.
ITraceMng * traceMng() const
Gestionnaire de trace.
Vecteur 1D de données avec sémantique par valeur (style STL).
Paramètres nécessaires à la construction d'une variable.
Infos caractérisant une variable.
Référence à une variable.
void fillMeshBuildInfo(MeshBuildInfo &build_info) override
Remplit build_info avec les informations nécessaires pour créer le maillage.
void allocateMeshItems(IPrimaryMesh *pm) override
Alloue les entités du maillage géré par ce service.
Ref< IMeshBuilder > createBuilder(const CaseMeshReaderReadInfo &read_info) const override
Retourne un builder pour créer et lire le maillage dont les informations sont spécifiées dans read_in...
Liste de noeuds d'un arbre DOM.
const value_type & const_reference
Type référence constante d'un élément du tableau.
#define ARCANE_REGISTER_SERVICE(aclass, a_service_property,...)
Macro pour enregistrer un service.
Integer len(const char *s)
Retourne la longueur de la chaîne s.
-- tab-width: 2; indent-tabs-mode: nil; coding: utf-8-with-signature --
Span< Int64 > Int64Span
Equivalent C d'un tableau à une dimension d'entiers 64 bits.
UniqueArray< Int64 > Int64UniqueArray
Tableau dynamique à une dimension d'entiers 64 bits.
std::int64_t Int64
Type entier signé sur 64 bits.
ArrayView< Real3 > Real3ArrayView
Equivalent C d'un tableau à une dimension de Real3.
Int32 Integer
Type représentant un entier.
UniqueArray< Real3 > Real3UniqueArray
Tableau dynamique à une dimension de vecteurs de rang 3.
ConstArrayView< Int32 > Int32ConstArrayView
Equivalent C d'un tableau à une dimension d'entiers 32 bits.
@ Polyhedral
Maillage polyedrique.
@ ST_CaseOption
Le service s'utilise au niveau du jeu de données.
ConstArrayView< Int64 > Int64ConstArrayView
Equivalent C d'un tableau à une dimension d'entiers 64 bits.
UniqueArray< Byte > ByteUniqueArray
Tableau dynamique à une dimension de caractères.
SharedArray< Int32 > Int32SharedArray
Tableau dynamique à une dimension d'entiers 32 bits.
UniqueArray< Int32 > Int32UniqueArray
Tableau dynamique à une dimension d'entiers 32 bits.
eItemKind
Genre d'entité de maillage.
@ IK_Node
Entité de maillage de genre noeud.
@ IK_Cell
Entité de maillage de genre maille.
@ IK_Face
Entité de maillage de genre face.
@ IK_Edge
Entité de maillage de genre arête.
double Real
Type représentant un réel.
ConstArrayView< Byte > ByteConstArrayView
Equivalent C d'un tableau à une dimension de caractères.
auto makeRef(InstanceType *t) -> Ref< InstanceType >
Créé une référence sur un pointeur.
UniqueArray< String > StringUniqueArray
Tableau dynamique à une dimension de chaînes de caractères.
Span< Int32 > Int32Span
Equivalent C d'un tableau à une dimension d'entiers 32 bits.
eDataType
Type d'une donnée.
@ DT_Int32
Donnée de type entier 32 bits.
@ DT_Int64
Donnée de type entier 64 bits.
@ DT_Unknown
Donnée de type inconnue ou non initialisée.
@ DT_Real
Donnée de type réel.
Span< const Int32 > Int32ConstSpan
Vue en lecture seule d'un tableau à une dimension d'entiers 32 bits.
ARCANE_DATATYPE_EXPORT eDataType dataTypeFromName(const char *name, bool &has_error)
Trouve le type associé à name.
const char * dataTypeName(eDataType type)
Nom du type de donnée.
std::int32_t Int32
Type entier signé sur 32 bits.