12#ifndef ARCCORE_ALINA_MPI_DISTRIBUTED_MATRIX_H
13#define ARCCORE_ALINA_MPI_DISTRIBUTED_MATRIX_H
26#include "arccore/alina/AlinaUtils.h"
27#include "arccore/alina/MessagePassingUtils.h"
29#include "arccore/accelerator/Atomic.h"
31#include "arccore/common/SmallArray.h"
37#include <unordered_map>
43namespace Arcane::Alina
51template <
class Backend>
52class CommunicationPattern
56 typedef typename Backend::value_type value_type;
57 typedef typename math::rhs_of<value_type>::type rhs_type;
58 typedef typename math::scalar_of<value_type>::type scalar_type;
59 typedef typename Backend::matrix matrix;
60 typedef typename Backend::vector vector;
62 typedef typename Backend::col_type col_type;
63 typedef typename Backend::ptr_type ptr_type;
67 std::vector<ptrdiff_t> nbr;
68 std::vector<ptr_type> ptr;
69 std::vector<col_type> col;
76 mutable std::vector<rhs_type> val;
82 std::vector<ptrdiff_t> nbr;
83 std::vector<ptr_type> ptr;
90 mutable std::vector<rhs_type> val;
94 std::shared_ptr<vector> x_rem;
98 size_t n_rem_cols,
const col_type* p_rem_cols)
100 , loc_cols(n_loc_cols)
102 ARCCORE_ALINA_TIC(
"communication pattern");
105 loc_beg = domain[comm.rank];
109 std::vector<col_type> rem_cols(p_rem_cols, p_rem_cols + n_rem_cols);
111 std::sort(rem_cols.begin(), rem_cols.end());
112 rem_cols.erase(std::unique(rem_cols.begin(), rem_cols.end()), rem_cols.end());
114 ptrdiff_t ncols = rem_cols.size();
115 ptrdiff_t rnbr = 0, snbr = 0, send_size = 0;
123 idx.reserve(2 * ncols);
124 for (
int i = 0, d = 0, last = -1; i < ncols; ++i) {
125 while (rem_cols[i] >= domain[d + 1])
135 idx.insert(idx.end(), std::make_pair(rem_cols[i], std::make_tuple(rnbr - 1, i)));
138 recv.val.resize(ncols);
139 recv.req.resize(rnbr);
141 recv.nbr.reserve(rnbr);
142 recv.ptr.reserve(rnbr + 1);
143 recv.ptr.push_back(0);
145 for (
int d = 0; d < comm.size; ++d) {
147 recv.nbr.push_back(d);
148 recv.ptr.push_back(recv.ptr.back() + rcounts[d]);
153 for (ptrdiff_t d = 0; d < comm.size; ++d) {
156 send_size += scounts[d];
160 send.col.resize(send_size);
161 send.val.resize(send_size);
162 send.req.resize(snbr);
164 send.nbr.reserve(snbr);
165 send.ptr.reserve(snbr + 1);
166 send.ptr.push_back(0);
168 for (ptrdiff_t d = 0; d < comm.size; ++d) {
170 send.nbr.push_back(d);
171 send.ptr.push_back(send.ptr.back() + scounts[d]);
177 for (
size_t i = 0; i < send.nbr.size(); ++i)
178 send.req[i] = comm.doIReceive(&send.col[send.ptr[i]], send.ptr[i + 1] - send.ptr[i],
179 send.nbr[i], tag_exc_cols);
182 for (
size_t i = 0; i < recv.nbr.size(); ++i)
183 recv.req[i] = comm.doISend(&rem_cols[recv.ptr[i]], recv.ptr[i + 1] - recv.ptr[i],
184 recv.nbr[i], tag_exc_cols);
186 ARCCORE_ALINA_TIC(
"MPI Wait");
190 comm.waitAll(all_requests);
191 ARCCORE_ALINA_TOC(
"MPI Wait");
194 for (col_type& c : send.col)
197 ARCCORE_ALINA_TOC(
"communication pattern");
200 template <
class OtherBackend>
201 CommunicationPattern(
const CommunicationPattern<OtherBackend>& C)
205 , loc_cols(C.loc_cols)
207 send.nbr = C.send.nbr;
208 send.ptr = C.send.ptr;
209 send.col = C.send.col;
210 send.val.resize(C.send.val.size());
211 send.req.resize(C.send.req.size());
213 recv.nbr = C.recv.nbr;
214 recv.ptr = C.recv.ptr;
215 recv.val.resize(C.recv.val.size());
216 recv.req.resize(C.recv.req.size());
219 void move_to_backend(
const backend_params& bprm = backend_params())
222 x_rem = Backend::create_vector(recv.count(), bprm);
226 gather = std::make_shared<Gather>(loc_cols, send.col, bprm);
230 int domain(ptrdiff_t col)
const
232 return std::get<0>(idx.at(col));
235 int local_index(ptrdiff_t col)
const
237 return std::get<1>(idx.at(col));
240 std::tuple<int, int> remote_info(ptrdiff_t col)
const
245 std::unordered_map<ptrdiff_t, std::tuple<int, int>>::const_iterator
251 std::unordered_map<ptrdiff_t, std::tuple<int, int>>::const_iterator
257 size_t renumber(
size_t n, col_type* col)
const
259 for (
size_t i = 0; i < n; ++i)
260 col[i] = std::get<1>(idx.at(col[i]));
264 bool needs_remote()
const
266 return !recv.val.empty();
269 template <
class Vector>
270 void start_exchange(
const Vector& x)
const
273 for (
size_t i = 0; i < recv.nbr.size(); ++i)
274 recv.req[i] = comm.doIReceive(&recv.val[recv.ptr[i]], recv.ptr[i + 1] - recv.ptr[i],
275 recv.nbr[i], tag_exc_vals);
278 if (!send.val.empty()) {
279 (*gather)(x, send.val);
281 for (
size_t i = 0; i < send.nbr.size(); ++i)
282 send.req[i] = comm.doISend(&send.val[send.ptr[i]], send.ptr[i + 1] - send.ptr[i],
283 send.nbr[i], tag_exc_vals);
287 void finish_exchange()
const
289 ARCCORE_ALINA_TIC(
"MPI Wait");
293 comm.waitAll(all_requests);
294 ARCCORE_ALINA_TOC(
"MPI Wait");
296 if (!recv.val.empty())
297 backend::copy(recv.val, *x_rem);
300 template <
typename T>
301 void exchange(
const T* send_val, T* recv_val)
const
303 for (
size_t i = 0; i < recv.nbr.size(); ++i)
304 recv.req[i] = comm.doIReceive(&recv_val[recv.ptr[i]], recv.ptr[i + 1] - recv.ptr[i],
305 recv.nbr[i], tag_exc_vals);
307 for (
size_t i = 0; i < send.nbr.size(); ++i)
308 send.req[i] = comm.doISend(
const_cast<T*
>(&send_val[send.ptr[i]]), send.ptr[i + 1] - send.ptr[i],
309 send.nbr[i], tag_exc_vals);
311 ARCCORE_ALINA_TIC(
"MPI Wait");
315 comm.waitAll(all_requests);
316 ARCCORE_ALINA_TOC(
"MPI Wait");
324 ptrdiff_t loc_col_shift()
const
331 using Gather = Backend::gather;
333 static const int tag_set_comm = 1001;
334 static const int tag_exc_cols = 1002;
335 static const int tag_exc_vals = 1003;
339 std::unordered_map<ptrdiff_t, std::tuple<int, int>> idx;
340 std::shared_ptr<Gather> gather;
345 friend class CommunicationPattern;
353template <
class Backend>
354class DistributedMatrix
358 typedef typename Backend::value_type value_type;
359 typedef typename math::rhs_of<value_type>::type rhs_type;
360 typedef typename math::scalar_of<value_type>::type scalar_type;
362 typedef typename Backend::matrix matrix;
364 typedef typename Backend::matrix build_matrix;
367 std::shared_ptr<build_matrix> a_loc,
368 std::shared_ptr<build_matrix> a_rem,
369 std::shared_ptr<CommPattern> c = std::shared_ptr<CommPattern>())
377 C = std::make_shared<CommPattern>(comm, a_loc->ncols, a_rem->nbNonZero(), a_rem->col);
380 a_rem->ncols = C->recv.count();
382 n_loc_rows = a_loc->nbRow();
383 n_loc_cols = a_loc->ncols;
384 n_loc_nonzeros = a_loc->nbNonZero() + a_rem->nbNonZero();
386 n_glob_rows = comm.reduceSum(n_loc_rows);
387 n_glob_cols = comm.reduceSum(n_loc_cols);
388 n_glob_nonzeros = comm.reduceSum(n_loc_nonzeros);
392 template <
class OtherBackend>
393 DistributedMatrix(
const DistributedMatrix<OtherBackend>& A)
394 : a_loc(std::make_shared<build_matrix>(*A.local()))
395 , a_rem(std::make_shared<build_matrix>(*A.remote()))
397 C = std::make_shared<CommPattern>(A.cpat());
399 this->a_rem->ncols = C->recv.count();
401 n_loc_rows = A.loc_rows();
402 n_loc_cols = A.loc_cols();
403 n_loc_nonzeros = A.loc_nonzeros();
404 n_glob_rows = A.glob_rows();
405 n_glob_cols = A.glob_cols();
406 n_glob_nonzeros = A.glob_nonzeros();
409 template <
class Matrix>
412 ptrdiff_t _n_loc_cols = -1)
413 : n_loc_rows(backend::nbRow(A))
414 , n_loc_cols(_n_loc_cols < 0 ? n_loc_rows : _n_loc_cols)
415 , n_loc_nonzeros(backend::nonzeros(A))
419 ptrdiff_t loc_beg = domain[comm.rank];
420 ptrdiff_t loc_end = domain[comm.rank + 1];
422 n_glob_cols = domain.
back();
423 n_glob_rows = comm.reduceSum(n_loc_rows);
424 n_glob_nonzeros = comm.reduceSum(n_loc_nonzeros);
427 a_loc = std::make_shared<build_matrix>();
428 a_rem = std::make_shared<build_matrix>();
430 build_matrix& A_loc = *a_loc;
431 build_matrix& A_rem = *a_rem;
433 A_loc.set_size(n_loc_rows, n_loc_cols,
true);
434 A_rem.set_size(n_loc_rows, 0,
true);
437 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
438 for (
auto a = backend::row_begin(A, i); a; ++a) {
439 ptrdiff_t c = a.col();
441 if (loc_beg <= c && c < loc_end)
449 A_loc.set_nonzeros(A_loc.scan_row_sizes());
450 A_rem.set_nonzeros(A_rem.scan_row_sizes());
453 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
454 ptrdiff_t loc_head = A_loc.ptr[i];
455 ptrdiff_t rem_head = A_rem.ptr[i];
457 for (
auto a = backend::row_begin(A, i); a; ++a) {
458 ptrdiff_t c = a.col();
459 value_type v = a.value();
461 if (loc_beg <= c && c < loc_end) {
462 A_loc.col[loc_head] = c - loc_beg;
463 A_loc.val[loc_head] = v;
467 A_rem.col[rem_head] = c;
468 A_rem.val[rem_head] = v;
475 C = std::make_shared<CommPattern>(comm, n_loc_cols, a_rem->nbNonZero(), a_rem->col);
476 a_rem->ncols = C->recv.count();
481 return C->mpi_comm();
484 std::shared_ptr<build_matrix> local()
const
489 std::shared_ptr<build_matrix> remote()
const
494 std::shared_ptr<matrix> local_backend()
const
499 std::shared_ptr<matrix> remote_backend()
const
504 ptrdiff_t loc_rows()
const
509 ptrdiff_t loc_cols()
const
514 ptrdiff_t loc_col_shift()
const
516 return C->loc_col_shift();
519 ptrdiff_t loc_nonzeros()
const
521 return n_loc_nonzeros;
524 ptrdiff_t glob_rows()
const
529 ptrdiff_t glob_cols()
const
534 ptrdiff_t glob_nonzeros()
const
536 return n_glob_nonzeros;
544 void set_local(std::shared_ptr<matrix> a)
549 void move_to_backend(
const backend_params& bprm = backend_params(),
bool keep_src =
false)
551 ARCCORE_ALINA_TIC(
"move to backend");
553 A_loc = Backend::copy_matrix(a_loc, bprm);
556 if (!A_rem && a_rem && a_rem->nbNonZero() > 0) {
558 auto rem_copy = std::make_shared<build_matrix>(*a_rem);
559 C->renumber(rem_copy->nbNonZero(), rem_copy->col);
560 A_rem = Backend::copy_matrix(rem_copy, bprm);
563 C->renumber(a_rem->nbNonZero(), a_rem->col);
564 A_rem = Backend::copy_matrix(a_rem, bprm);
568 C->move_to_backend(bprm);
574 ARCCORE_ALINA_TOC(
"move to backend");
577 template <
class A,
class VecX,
class B,
class VecY>
578 void mul(A alpha,
const VecX& x, B beta, VecY& y)
const
580 const auto one = math::identity<scalar_type>();
582 C->start_exchange(x);
585 backend::spmv(alpha, *A_loc, x, beta, y);
588 C->finish_exchange();
590 if (C->needs_remote())
591 backend::spmv(alpha, *A_rem, *C->x_rem, one, y);
594 template <
class Vec1,
class Vec2,
class Vec3>
595 void residual(
const Vec1& f,
const Vec2& x, Vec3& r)
const
597 const auto one = math::identity<scalar_type>();
599 C->start_exchange(x);
600 backend::residual(f, *A_loc, x, r);
602 C->finish_exchange();
604 if (C->needs_remote())
605 backend::spmv(-one, *A_rem, *C->x_rem, one, r);
610 std::shared_ptr<CommPattern> C;
611 std::shared_ptr<matrix> A_loc, A_rem;
612 std::shared_ptr<build_matrix> a_loc, a_rem;
614 ptrdiff_t n_loc_rows, n_glob_rows;
615 ptrdiff_t n_loc_cols, n_glob_cols;
616 ptrdiff_t n_loc_nonzeros, n_glob_nonzeros;
622template <
class Backend>
623std::shared_ptr<DistributedMatrix<Backend>>
626 ARCCORE_ALINA_TIC(
"MPI Transpose");
627 typedef typename Backend::value_type value_type;
629 typedef typename Backend::matrix build_matrix;
630 typedef typename Backend::col_type
col_type;
632 static const int tag_cnt = 2001;
633 static const int tag_col = 2002;
634 static const int tag_val = 2003;
637 const CommPattern& C = A.cpat();
639 build_matrix& A_loc = *A.local();
640 build_matrix& A_rem = *A.remote();
642 ptrdiff_t nrows = A_loc.ncols;
643 ptrdiff_t ncols = A_loc.nbRow();
655 std::shared_ptr<build_matrix> t_ptr;
657 std::vector<col_type> tmp_col(A_rem.col.data(), A_rem.col.data() + A_rem.nbNonZero());
658 C.renumber(tmp_col.size(), tmp_col.data());
660 col_type* a_rem_col = tmp_col.data();
661 col_type* a_rem_col_backup = A_rem.col.data();
662 A_rem.col.setPointerZeroCopy(a_rem_col);
666 t_ptr = transpose(A_rem);
668 A_rem.col.setPointerZeroCopy(a_rem_col_backup);
671 build_matrix& t_rem = *t_ptr;
675 ptrdiff_t loc_beg = domain[comm.rank];
676 for (
size_t i = 0; i < t_rem.nbNonZero(); ++i)
677 t_rem.col[i] += loc_beg;
680 std::vector<ptrdiff_t> row_size(t_rem.nbRow());
681 for (
size_t i = 0; i < t_rem.nbRow(); ++i)
682 row_size[i] = t_rem.ptr[i + 1] - t_rem.ptr[i];
686 std::vector<ptrdiff_t> rem_ptr(C.send.count() + 1);
689 for (
size_t i = 0; i < C.send.nbr.size(); ++i) {
690 ptrdiff_t beg = C.send.ptr[i];
691 ptrdiff_t end = C.send.ptr[i + 1];
693 recv_cnt_req[i] = comm.doIReceive(&rem_ptr[beg + 1], end - beg, C.send.nbr[i], tag_cnt);
696 for (
size_t i = 0; i < C.recv.nbr.size(); ++i) {
697 ptrdiff_t beg = C.recv.ptr[i];
698 ptrdiff_t end = C.recv.ptr[i + 1];
700 send_cnt_req[i] = comm.doISend(&row_size[beg], end - beg, C.recv.nbr[i], tag_cnt);
703 ARCCORE_ALINA_TIC(
"MPI Wait");
704 SmallArray<MessagePassing::Request> all_requests;
705 all_requests.addRange(send_cnt_req);
706 all_requests.addRange(recv_cnt_req);
707 comm.waitAll(all_requests);
708 ARCCORE_ALINA_TOC(
"MPI Wait");
709 std::partial_sum(rem_ptr.begin(), rem_ptr.end(), rem_ptr.begin());
712 std::vector<col_type> rem_col(rem_ptr.back());
713 std::vector<value_type> rem_val(rem_ptr.back());
715 for (
size_t i = 0; i < C.send.nbr.size(); ++i) {
716 ptrdiff_t rbeg = C.send.ptr[i];
717 ptrdiff_t rend = C.send.ptr[i + 1];
719 ptrdiff_t cbeg = rem_ptr[rbeg];
720 ptrdiff_t cend = rem_ptr[rend];
722 recv_col_req[i] = comm.doIReceive(&rem_col[cbeg], cend - cbeg, C.send.nbr[i], tag_col);
723 recv_val_req[i] = comm.doIReceive(&rem_val[cbeg], cend - cbeg, C.send.nbr[i], tag_val);
726 for (
size_t i = 0; i < C.recv.nbr.size(); ++i) {
727 ptrdiff_t rbeg = C.recv.ptr[i];
728 ptrdiff_t rend = C.recv.ptr[i + 1];
730 ptrdiff_t cbeg = t_rem.ptr[rbeg];
731 ptrdiff_t cend = t_rem.ptr[rend];
733 send_col_req[i] = comm.doISend(&t_rem.col[cbeg], cend - cbeg, C.recv.nbr[i], tag_col);
734 send_val_req[i] = comm.doISend(&t_rem.val[cbeg], cend - cbeg, C.recv.nbr[i], tag_val);
739 auto T_ptr = std::make_shared<build_matrix>();
740 build_matrix& T_rem = *T_ptr;
741 T_rem.set_size(nrows, 0,
true);
743 for (
size_t i = 0; i < C.send.count(); ++i)
744 T_rem.ptr[1 + C.send.col[i]] += rem_ptr[i + 1] - rem_ptr[i];
746 T_rem.scan_row_sizes();
747 T_rem.set_nonzeros();
751 ARCCORE_ALINA_TIC(
"MPI Wait");
752 all_requests.clear();
753 all_requests.addRange(recv_col_req);
754 all_requests.addRange(recv_val_req);
755 all_requests.addRange(send_col_req);
756 all_requests.addRange(send_val_req);
757 comm.waitAll(all_requests);
758 ARCCORE_ALINA_TOC(
"MPI Wait");
760 for (
size_t i = 0; i < C.send.count(); ++i) {
761 ptrdiff_t row = C.send.col[i];
762 ptrdiff_t head = T_rem.ptr[row];
764 for (ptrdiff_t j = rem_ptr[i]; j < rem_ptr[i + 1]; ++j, ++head) {
765 T_rem.col[head] = rem_col[j];
766 T_rem.val[head] = rem_val[j];
769 T_rem.ptr[row] = head;
772 std::rotate(T_rem.ptr.data(), T_rem.ptr.data() + nrows, T_rem.ptr.data() + nrows + 1);
775 ARCCORE_ALINA_TOC(
"MPI Transpose");
777 return std::make_shared<DistributedMatrix<Backend>>(comm, transpose(A_loc), T_ptr);
783template <
class Backend>
784std::shared_ptr<typename Backend::matrix>
787 bool need_values =
true)
789 typedef typename Backend::matrix build_matrix;
791 static const int tag_ptr = 3001;
792 static const int tag_col = 3002;
793 static const int tag_val = 3003;
795 ARCCORE_ALINA_TIC(
"remote_rows");
798 build_matrix& B_loc = *B.local();
799 build_matrix& B_rem = *B.remote();
800 ptrdiff_t B_beg = B.loc_col_shift();
802 size_t nrecv = C.recv.nbr.size();
803 size_t nsend = C.send.nbr.size();
807 SmallArray<MessagePassing::Request> send_ptr_req(nsend);
808 SmallArray<MessagePassing::Request> send_col_req(nsend);
809 SmallArray<MessagePassing::Request> send_val_req(nsend);
811 std::vector<build_matrix> send_rows(nsend);
813 for (
size_t k = 0; k < nsend; ++k) {
814 ptrdiff_t beg = C.send.ptr[k];
815 ptrdiff_t end = C.send.ptr[k + 1];
817 build_matrix& m = send_rows[k];
818 m.set_size(end - beg, 0,
false);
821 for (ptrdiff_t i = 0, ii = beg; ii < end; ++i, ++ii) {
822 ptrdiff_t r = C.send.col[ii];
824 ptrdiff_t w = (B_loc.ptr[r + 1] - B_loc.ptr[r]) + (B_rem.ptr[r + 1] - B_rem.ptr[r]);
831 send_ptr_req[k] = comm.doISend(m.ptr.data(), m.nbRow(), C.send.nbr[k], tag_ptr);
833 m.set_nonzeros(nnz, need_values);
835 for (ptrdiff_t i = 0, ii = beg, head = 0; ii < end; ++i, ++ii) {
836 ptrdiff_t r = C.send.col[ii];
839 for (ptrdiff_t j = B_loc.ptr[r]; j < B_loc.ptr[r + 1]; ++j) {
840 m.col[head] = B_loc.col[j] + B_beg;
843 m.val[head] = B_loc.val[j];
849 for (ptrdiff_t j = B_rem.ptr[r]; j < B_rem.ptr[r + 1]; ++j) {
850 m.col[head] = B_rem.col[j];
853 m.val[head] = B_rem.val[j];
859 send_col_req[k] = comm.doISend(m.col.data(), m.nbNonZero(), C.send.nbr[k], tag_col);
861 send_val_req[k] = comm.doISend(m.val.data(), m.nbNonZero(), C.send.nbr[k], tag_val);
865 UniqueArray<MessagePassing::Request> recv_ptr_req(nrecv);
866 UniqueArray<MessagePassing::Request> recv_col_req(nrecv);
867 UniqueArray<MessagePassing::Request> recv_val_req(nrecv);
869 auto B_nbr = std::make_shared<build_matrix>();
870 B_nbr->set_size(C.recv.count(), 0,
false);
873 for (
size_t k = 0; k < nrecv; ++k) {
874 ptrdiff_t beg = C.recv.ptr[k];
875 ptrdiff_t end = C.recv.ptr[k + 1];
877 recv_ptr_req[k] = comm.doIReceive(&B_nbr->ptr[beg + 1], end - beg, C.recv.nbr[k], tag_ptr);
880 ARCCORE_ALINA_TIC(
"MPI Wait");
881 comm.waitAll(recv_ptr_req);
882 ARCCORE_ALINA_TOC(
"MPI Wait");
884 B_nbr->set_nonzeros(B_nbr->scan_row_sizes(), need_values);
886 for (
size_t k = 0; k < nrecv; ++k) {
887 ptrdiff_t rbeg = C.recv.ptr[k];
888 ptrdiff_t rend = C.recv.ptr[k + 1];
890 ptrdiff_t cbeg = B_nbr->ptr[rbeg];
891 ptrdiff_t cend = B_nbr->ptr[rend];
893 recv_col_req[k] = comm.doIReceive(&B_nbr->col[cbeg], cend - cbeg, C.recv.nbr[k], tag_col);
896 recv_val_req[k] = comm.doIReceive(&B_nbr->val[cbeg], cend - cbeg, C.recv.nbr[k], tag_val);
899 SmallArray<MessagePassing::Request> all_requests;
901 all_requests.addRange(send_val_req);
902 all_requests.addRange(recv_val_req);
904 all_requests.addRange(send_col_req);
905 all_requests.addRange(send_ptr_req);
906 all_requests.addRange(recv_col_req);
907 ARCCORE_ALINA_TIC(
"MPI Wait");
908 comm.waitAll(all_requests);
909 ARCCORE_ALINA_TOC(
"MPI Wait");
911 ARCCORE_ALINA_TOC(
"remote_rows");
918template <
class Backend>
919std::shared_ptr<DistributedMatrix<Backend>>
922 typedef typename Backend::value_type value_type;
923 using build_matrix = Backend::matrix;
924 typedef typename Backend::col_type
col_type;
925 ARCCORE_ALINA_TIC(
"product");
929 build_matrix& A_loc = *A.local();
930 build_matrix& A_rem = *A.remote();
931 build_matrix& B_loc = *B.local();
932 build_matrix& B_rem = *B.remote();
934 ptrdiff_t A_rows = A.loc_rows();
935 ptrdiff_t B_cols = B.loc_cols();
937 ptrdiff_t B_beg = B.loc_col_shift();
938 ptrdiff_t B_end = B_beg + B_cols;
940 auto b_nbr = remote_rows(Acp, B);
941 build_matrix& B_nbr = *b_nbr;
945 std::vector<col_type> rem_cols(B_rem.nbNonZero() + B_nbr.nbNonZero());
947 std::copy(B_nbr.col.data(), B_nbr.col.data() + B_nbr.nbNonZero(),
948 std::copy(B_rem.col.data(), B_rem.col.data() + B_rem.nbNonZero(), rem_cols.begin()));
950 std::sort(rem_cols.begin(), rem_cols.end());
951 rem_cols.erase(std::unique(rem_cols.begin(), rem_cols.end()), rem_cols.end());
953 ptrdiff_t n_rem_cols = 0;
954 std::unordered_map<ptrdiff_t, int> rem_idx(2 * rem_cols.size());
955 for (ptrdiff_t c : rem_cols) {
956 if (c >= B_beg && c < B_end)
958 rem_idx[c] = n_rem_cols++;
962 auto c_loc = std::make_shared<build_matrix>();
963 auto c_rem = std::make_shared<build_matrix>();
965 build_matrix& C_loc = *c_loc;
966 build_matrix& C_rem = *c_rem;
968 C_loc.set_size(A_rows, B_cols,
false);
969 C_rem.set_size(A_rows, 0,
false);
974 ARCCORE_ALINA_TIC(
"analyze");
976 std::vector<ptrdiff_t> loc_marker(B_end - B_beg, -1);
977 std::vector<ptrdiff_t> rem_marker(n_rem_cols, -1);
979 for (ptrdiff_t ia = begin; ia < (begin + size); ++ia) {
980 ptrdiff_t loc_cols = 0;
981 ptrdiff_t rem_cols = 0;
983 for (ptrdiff_t ja = A_loc.ptr[ia], ea = A_loc.ptr[ia + 1]; ja < ea; ++ja) {
984 ptrdiff_t ca = A_loc.col[ja];
986 for (ptrdiff_t jb = B_loc.ptr[ca], eb = B_loc.ptr[ca + 1]; jb < eb; ++jb) {
987 ptrdiff_t cb = B_loc.col[jb];
989 if (loc_marker[cb] != ia) {
995 for (ptrdiff_t jb = B_rem.ptr[ca], eb = B_rem.ptr[ca + 1]; jb < eb; ++jb) {
996 ptrdiff_t cb = rem_idx[B_rem.col[jb]];
998 if (rem_marker[cb] != ia) {
1005 for (ptrdiff_t ja = A_rem.ptr[ia], ea = A_rem.ptr[ia + 1]; ja < ea; ++ja) {
1006 ptrdiff_t ca = Acp.local_index(A_rem.col[ja]);
1008 for (ptrdiff_t jb = B_nbr.ptr[ca], eb = B_nbr.ptr[ca + 1]; jb < eb; ++jb) {
1009 ptrdiff_t cb = B_nbr.col[jb];
1011 if (cb >= B_beg && cb < B_end) {
1014 if (loc_marker[cb] != ia) {
1015 loc_marker[cb] = ia;
1022 if (rem_marker[cb] != ia) {
1023 rem_marker[cb] = ia;
1030 C_loc.ptr[ia + 1] = loc_cols;
1031 C_rem.ptr[ia + 1] = rem_cols;
1034 ARCCORE_ALINA_TOC(
"analyze");
1036 C_loc.set_nonzeros(C_loc.scan_row_sizes());
1037 C_rem.set_nonzeros(C_rem.scan_row_sizes());
1039 ARCCORE_ALINA_TIC(
"compute");
1041 std::vector<ptrdiff_t> loc_marker(B_end - B_beg, -1);
1042 std::vector<ptrdiff_t> rem_marker(n_rem_cols, -1);
1044 for (ptrdiff_t ia = begin; ia < (begin + size); ++ia) {
1045 ptrdiff_t loc_beg = C_loc.ptr[ia];
1046 ptrdiff_t rem_beg = C_rem.ptr[ia];
1047 ptrdiff_t loc_end = loc_beg;
1048 ptrdiff_t rem_end = rem_beg;
1050 for (ptrdiff_t ja = A_loc.ptr[ia], ea = A_loc.ptr[ia + 1]; ja < ea; ++ja) {
1051 ptrdiff_t ca = A_loc.col[ja];
1052 value_type va = A_loc.val[ja];
1054 for (ptrdiff_t jb = B_loc.ptr[ca], eb = B_loc.ptr[ca + 1]; jb < eb; ++jb) {
1055 ptrdiff_t cb = B_loc.col[jb];
1056 value_type vb = B_loc.val[jb];
1058 if (loc_marker[cb] < loc_beg) {
1059 loc_marker[cb] = loc_end;
1061 C_loc.col[loc_end] = cb;
1062 C_loc.val[loc_end] = va * vb;
1067 C_loc.val[loc_marker[cb]] += va * vb;
1071 for (ptrdiff_t jb = B_rem.ptr[ca], eb = B_rem.ptr[ca + 1]; jb < eb; ++jb) {
1072 ptrdiff_t gb = B_rem.col[jb];
1073 ptrdiff_t cb = rem_idx[gb];
1074 value_type vb = B_rem.val[jb];
1076 if (rem_marker[cb] < rem_beg) {
1077 rem_marker[cb] = rem_end;
1079 C_rem.col[rem_end] = gb;
1080 C_rem.val[rem_end] = va * vb;
1085 C_rem.val[rem_marker[cb]] += va * vb;
1090 for (ptrdiff_t ja = A_rem.ptr[ia], ea = A_rem.ptr[ia + 1]; ja < ea; ++ja) {
1091 ptrdiff_t ca = Acp.local_index(A_rem.col[ja]);
1092 value_type va = A_rem.val[ja];
1094 for (ptrdiff_t jb = B_nbr.ptr[ca], eb = B_nbr.ptr[ca + 1]; jb < eb; ++jb) {
1095 ptrdiff_t gb = B_nbr.col[jb];
1096 value_type vb = B_nbr.val[jb];
1098 if (gb >= B_beg && gb < B_end) {
1099 ptrdiff_t cb = gb - B_beg;
1101 if (loc_marker[cb] < loc_beg) {
1102 loc_marker[cb] = loc_end;
1104 C_loc.col[loc_end] = cb;
1105 C_loc.val[loc_end] = va * vb;
1110 C_loc.val[loc_marker[cb]] += va * vb;
1114 ptrdiff_t cb = rem_idx[gb];
1116 if (rem_marker[cb] < rem_beg) {
1117 rem_marker[cb] = rem_end;
1119 C_rem.col[rem_end] = gb;
1120 C_rem.val[rem_end] = va * vb;
1125 C_rem.val[rem_marker[cb]] += va * vb;
1132 ARCCORE_ALINA_TOC(
"compute");
1133 ARCCORE_ALINA_TOC(
"product");
1135 return std::make_shared<DistributedMatrix<Backend>>(A.comm(), c_loc, c_rem);
1141template <
class Backend,
class T>
1144 using build_matrix = Backend::matrix;
1146 build_matrix& A_loc = *A.local();
1147 build_matrix& A_rem = *A.remote();
1149 ptrdiff_t n = A_loc.nbRow();
1152 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1153 for (ptrdiff_t j = A_loc.ptr[i], e = A_loc.ptr[i + 1]; j < e; ++j)
1155 for (ptrdiff_t j = A_rem.ptr[i], e = A_rem.ptr[i + 1]; j < e; ++j)
1164template <
class Backend>
1167 sort_rows(*A.local());
1168 sort_rows(*A.remote());
1179namespace Arcane::Alina::backend
1185template <
class Backend>
1190 return A.loc_rows();
1194template <
class Backend,
class Alpha,
class Vec1,
class Beta,
class Vec2>
1197 static void apply(Alpha alpha,
1199 const Vec1& x, Beta beta, Vec2& y)
1201 A.mul(alpha, x, beta, y);
1205template <
class Backend,
class Vec1,
class Vec2,
class Vec3>
1208 static void apply(
const Vec1& rhs,
1210 const Vec2& x, Vec3& r)
1212 A.residual(rhs, x, r);
1223namespace Arcane::Alina
1230template <
class Backend>
1231std::shared_ptr<numa_vector<typename Backend::value_type>>
1234 return diagonal(*A.local(), invert);
1241template <
bool scale,
class Backend>
1242typename math::scalar_of<typename Backend::value_type>::type
1243spectral_radius(
const DistributedMatrix<Backend>& A,
int power_iters = 0)
1245 ARCCORE_ALINA_TIC(
"spectral radius");
1246 typedef typename Backend::value_type value_type;
1247 typedef typename math::rhs_of<value_type>::type rhs_type;
1248 typedef typename math::scalar_of<value_type>::type scalar_type;
1249 typedef CSRMatrix<value_type> build_matrix;
1251 AlinaCommunicator comm = A.comm();
1253 const build_matrix& A_loc = *A.local();
1254 const build_matrix& A_rem = *A.remote();
1255 const CommunicationPattern<Backend>& C = A.cpat();
1257 const ptrdiff_t n = A_loc.nbRow();
1258 scalar_type radius = 0;
1261 if (power_iters <= 0) {
1263 scalar_type emax = 0;
1264 value_type dia = math::identity<value_type>();
1266 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1269 for (ptrdiff_t j = A_loc.ptr[i], e = A_loc.ptr[i + 1]; j < e; ++j) {
1270 ptrdiff_t c = A_loc.col[j];
1271 value_type v = A_loc.val[j];
1275 if (scale && c == i)
1279 for (ptrdiff_t j = A_rem.ptr[i], e = A_rem.ptr[i + 1]; j < e; ++j)
1280 s += math::norm(A_rem.val[j]);
1283 s *= math::norm(math::inverse(dia));
1285 emax = std::max(emax, s);
1297 std::atomic<scalar_type> atomic_b0_loc_norm = {};
1303 std::mt19937 rng(comm.size * nt + tid);
1304 std::uniform_real_distribution<scalar_type> rnd(-1, 1);
1306 scalar_type t_norm = 0;
1308 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1309 rhs_type v = math::constant<rhs_type>(rnd(rng));
1312 t_norm += math::norm(math::inner_product(v, v));
1314 for (ptrdiff_t j = A_rem.ptr[i], e = A_rem.ptr[i + 1]; j < e; ++j) {
1315 rem_col[j] = C.local_index(A_rem.col[j]);
1320 atomic_b0_loc_norm += t_norm;
1322 scalar_type b0_loc_norm = atomic_b0_loc_norm;
1323 scalar_type b0_norm = comm.reduceSum(b0_loc_norm);
1326 b0_norm = 1 /
sqrt(b0_norm);
1328 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1329 b0[i] = b0_norm * b0[i];
1333 std::vector<rhs_type> b0_send(C.send.count());
1334 std::vector<rhs_type> b0_recv(C.recv.count());
1336 for (
size_t i = 0, m = C.send.count(); i < m; ++i)
1337 b0_send[i] = b0[C.send.col[i]];
1338 C.exchange(b0_send.data(), b0_recv.data());
1340 for (
int iter = 0; iter < power_iters;) {
1345 std::atomic<scalar_type> atomic_b1_loc_norm = 0;
1346 std::atomic<scalar_type> atomic_loc_radius = 0;
1349 scalar_type t_norm = 0;
1350 scalar_type t_radi = 0;
1351 value_type dia = math::identity<value_type>();
1353 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1354 rhs_type s = math::zero<rhs_type>();
1356 for (ptrdiff_t j = A_loc.ptr[i], e = A_loc.ptr[i + 1]; j < e; ++j) {
1357 ptrdiff_t c = A_loc.col[j];
1358 value_type v = A_loc.val[j];
1359 if (scale && c == i)
1364 for (ptrdiff_t j = A_rem.ptr[i], e = A_rem.ptr[i + 1]; j < e; ++j)
1365 s += A_rem.val[j] * b0_recv[rem_col[j]];
1368 s = math::inverse(dia) * s;
1370 t_norm += math::norm(math::inner_product(s, s));
1371 t_radi += math::norm(math::inner_product(s, b0[i]));
1378 atomic_b1_loc_norm += t_norm;
1379 atomic_loc_radius += t_radi;
1382 scalar_type b1_loc_norm = atomic_b1_loc_norm;
1383 scalar_type loc_radius = atomic_loc_radius;
1385 radius = comm.reduceSum(loc_radius);
1387 if (++iter < power_iters) {
1388 scalar_type b1_norm;
1389 b1_norm = comm.reduceSum(b1_loc_norm);
1392 b1_norm = 1 /
sqrt(b1_norm);
1394 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1395 b0[i] = b1_norm * b1[i];
1399 for (
size_t i = 0, m = C.send.count(); i < m; ++i)
1400 b0_send[i] = b0[C.send.col[i]];
1401 C.exchange(b0_send.data(), b0_recv.data());
1405 ARCCORE_ALINA_TOC(
"spectral radius");
1407 return radius < 0 ? static_cast<scalar_type>(2) : radius;
Call to handle communication pattern.
Distributed Matrix using message passing.
NUMA-aware vector container.
void addRange(ConstReferenceType val, Int64 n)
Ajoute n élément de valeur val à la fin du tableau.
T & back()
Dernier élément du tableau.
static Int32 maxAllowedThread()
Nombre maximum de threads autorisés pour le multi-threading.
Informations d'exécution d'une boucle.
Matrix class, to be used by user.
Tableau 1D de données avec buffer pré-alloué sur la pile.
static Int32 currentTaskThreadIndex()
Indice (entre 0 et nbAllowedThread()-1) du thread exécutant la tâche actuelle.
Vecteur 1D de données avec sémantique par valeur (style STL).
Vector class, to be used by user.
__host__ __device__ DataType doAtomic(DataType *ptr, ValueType value)
Applique l'opération atomique Operation à la valeur à l'adresse ptr avec la valeur value.
C void mpAllToAll(IMessagePassingMng *pm, Span< const char > send_buf, Span< char > recv_buf, Int32 count)
apfloat sqrt(apfloat v)
Racine carrée de v.
void arccoreParallelFor(const ComplexForLoopRanges< RankValue, IndexType_ > &loop_ranges, const ForLoopRunInfo &run_info, const LambdaType &lambda_function, const ReducerArgs &... reducer_args)
Applique en concurrence la fonction lambda lambda_function sur l'intervalle d'itération donné par loo...
std::int32_t Int32
Type entier signé sur 32 bits.
Wrapper de commodité autour de MPI_Comm.
UniqueArray< T > exclusive_sum(T n) const
Somme exclusive sur le communicateur MPI.
Alina::detail::empty_params params
Implementation for residual error compuatation.
Implementation for function returning the number of rows in a matrix.
Implementation for matrix-vector product.