12#ifndef ARCCORE_ALINA_MPI_DISTRIBUTED_MATRIX_H
13#define ARCCORE_ALINA_MPI_DISTRIBUTED_MATRIX_H
26#include "arccore/alina/AlinaUtils.h"
27#include "arccore/alina/MessagePassingUtils.h"
29#include "arccore/accelerator/Atomic.h"
35#include <unordered_map>
43namespace Arcane::Alina
51template <
class Backend>
52class CommunicationPattern
56 typedef typename Backend::value_type value_type;
57 typedef typename math::rhs_of<value_type>::type rhs_type;
58 typedef typename math::scalar_of<value_type>::type scalar_type;
59 typedef typename Backend::matrix matrix;
60 typedef typename Backend::vector vector;
62 typedef typename Backend::col_type col_type;
63 typedef typename Backend::ptr_type ptr_type;
67 std::vector<ptrdiff_t> nbr;
68 std::vector<ptr_type> ptr;
69 std::vector<col_type> col;
76 mutable std::vector<rhs_type> val;
82 std::vector<ptrdiff_t> nbr;
83 std::vector<ptr_type> ptr;
90 mutable std::vector<rhs_type> val;
94 std::shared_ptr<vector> x_rem;
98 size_t n_rem_cols,
const col_type* p_rem_cols)
100 , loc_cols(n_loc_cols)
102 ARCCORE_ALINA_TIC(
"communication pattern");
105 loc_beg = domain[comm.rank];
109 std::vector<col_type> rem_cols(p_rem_cols, p_rem_cols + n_rem_cols);
111 std::sort(rem_cols.begin(), rem_cols.end());
112 rem_cols.erase(std::unique(rem_cols.begin(), rem_cols.end()), rem_cols.end());
114 ptrdiff_t ncols = rem_cols.size();
115 ptrdiff_t rnbr = 0, snbr = 0, send_size = 0;
123 idx.reserve(2 * ncols);
124 for (
int i = 0, d = 0, last = -1; i < ncols; ++i) {
125 while (rem_cols[i] >= domain[d + 1])
135 idx.insert(idx.end(), std::make_pair(rem_cols[i], std::make_tuple(rnbr - 1, i)));
138 recv.val.resize(ncols);
139 recv.req.resize(rnbr);
141 recv.nbr.reserve(rnbr);
142 recv.ptr.reserve(rnbr + 1);
143 recv.ptr.push_back(0);
145 for (
int d = 0; d < comm.size; ++d) {
147 recv.nbr.push_back(d);
148 recv.ptr.push_back(recv.ptr.back() + rcounts[d]);
153 for (ptrdiff_t d = 0; d < comm.size; ++d) {
156 send_size += scounts[d];
160 send.col.resize(send_size);
161 send.val.resize(send_size);
162 send.req.resize(snbr);
164 send.nbr.reserve(snbr);
165 send.ptr.reserve(snbr + 1);
166 send.ptr.push_back(0);
168 for (ptrdiff_t d = 0; d < comm.size; ++d) {
170 send.nbr.push_back(d);
171 send.ptr.push_back(send.ptr.back() + scounts[d]);
177 for (
size_t i = 0; i < send.nbr.size(); ++i)
178 send.req[i] = comm.doIReceive(&send.col[send.ptr[i]], send.ptr[i + 1] - send.ptr[i],
179 send.nbr[i], tag_exc_cols);
182 for (
size_t i = 0; i < recv.nbr.size(); ++i)
183 recv.req[i] = comm.doISend(&rem_cols[recv.ptr[i]], recv.ptr[i + 1] - recv.ptr[i],
184 recv.nbr[i], tag_exc_cols);
186 ARCCORE_ALINA_TIC(
"MPI Wait");
188 comm.waitAll(send.req);
189 comm.waitAll(recv.req);
190 ARCCORE_ALINA_TOC(
"MPI Wait");
193 for (col_type& c : send.col)
196 ARCCORE_ALINA_TOC(
"communication pattern");
199 template <
class OtherBackend>
200 CommunicationPattern(
const CommunicationPattern<OtherBackend>& C)
204 , loc_cols(C.loc_cols)
206 send.nbr = C.send.nbr;
207 send.ptr = C.send.ptr;
208 send.col = C.send.col;
209 send.val.resize(C.send.val.size());
210 send.req.resize(C.send.req.size());
212 recv.nbr = C.recv.nbr;
213 recv.ptr = C.recv.ptr;
214 recv.val.resize(C.recv.val.size());
215 recv.req.resize(C.recv.req.size());
218 void move_to_backend(
const backend_params& bprm = backend_params())
221 x_rem = Backend::create_vector(recv.count(), bprm);
225 gather = std::make_shared<Gather>(loc_cols, send.col, bprm);
229 int domain(ptrdiff_t col)
const
231 return std::get<0>(idx.at(col));
234 int local_index(ptrdiff_t col)
const
236 return std::get<1>(idx.at(col));
239 std::tuple<int, int> remote_info(ptrdiff_t col)
const
244 std::unordered_map<ptrdiff_t, std::tuple<int, int>>::const_iterator
250 std::unordered_map<ptrdiff_t, std::tuple<int, int>>::const_iterator
256 size_t renumber(
size_t n, col_type* col)
const
258 for (
size_t i = 0; i < n; ++i)
259 col[i] = std::get<1>(idx.at(col[i]));
263 bool needs_remote()
const
265 return !recv.val.empty();
268 template <
class Vector>
269 void start_exchange(
const Vector& x)
const
272 for (
size_t i = 0; i < recv.nbr.size(); ++i)
273 recv.req[i] = comm.doIReceive(&recv.val[recv.ptr[i]], recv.ptr[i + 1] - recv.ptr[i],
274 recv.nbr[i], tag_exc_vals);
277 if (!send.val.empty()) {
278 (*gather)(x, send.val);
280 for (
size_t i = 0; i < send.nbr.size(); ++i)
281 send.req[i] = comm.doISend(&send.val[send.ptr[i]], send.ptr[i + 1] - send.ptr[i],
282 send.nbr[i], tag_exc_vals);
286 void finish_exchange()
const
288 ARCCORE_ALINA_TIC(
"MPI Wait");
290 comm.waitAll(recv.req);
291 comm.waitAll(send.req);
292 ARCCORE_ALINA_TOC(
"MPI Wait");
294 if (!recv.val.empty())
295 backend::copy(recv.val, *x_rem);
298 template <
typename T>
299 void exchange(
const T* send_val, T* recv_val)
const
301 for (
size_t i = 0; i < recv.nbr.size(); ++i)
302 recv.req[i] = comm.doIReceive(&recv_val[recv.ptr[i]], recv.ptr[i + 1] - recv.ptr[i],
303 recv.nbr[i], tag_exc_vals);
305 for (
size_t i = 0; i < send.nbr.size(); ++i)
306 send.req[i] = comm.doISend(
const_cast<T*
>(&send_val[send.ptr[i]]), send.ptr[i + 1] - send.ptr[i],
307 send.nbr[i], tag_exc_vals);
309 ARCCORE_ALINA_TIC(
"MPI Wait");
311 comm.waitAll(recv.req);
312 comm.waitAll(send.req);
313 ARCCORE_ALINA_TOC(
"MPI Wait");
321 ptrdiff_t loc_col_shift()
const
328 using Gather = Backend::gather;
330 static const int tag_set_comm = 1001;
331 static const int tag_exc_cols = 1002;
332 static const int tag_exc_vals = 1003;
336 std::unordered_map<ptrdiff_t, std::tuple<int, int>> idx;
337 std::shared_ptr<Gather> gather;
342 friend class CommunicationPattern;
350template <
class Backend>
351class DistributedMatrix
355 typedef typename Backend::value_type value_type;
356 typedef typename math::rhs_of<value_type>::type rhs_type;
357 typedef typename math::scalar_of<value_type>::type scalar_type;
359 typedef typename Backend::matrix matrix;
361 typedef typename Backend::matrix build_matrix;
364 std::shared_ptr<build_matrix> a_loc,
365 std::shared_ptr<build_matrix> a_rem,
366 std::shared_ptr<CommPattern> c = std::shared_ptr<CommPattern>())
374 C = std::make_shared<CommPattern>(comm, a_loc->ncols, a_rem->nbNonZero(), a_rem->col);
377 a_rem->ncols = C->recv.count();
379 n_loc_rows = a_loc->nbRow();
380 n_loc_cols = a_loc->ncols;
381 n_loc_nonzeros = a_loc->nbNonZero() + a_rem->nbNonZero();
383 n_glob_rows = comm.reduceSum(n_loc_rows);
384 n_glob_cols = comm.reduceSum(n_loc_cols);
385 n_glob_nonzeros = comm.reduceSum(n_loc_nonzeros);
389 template <
class OtherBackend>
390 DistributedMatrix(
const DistributedMatrix<OtherBackend>& A)
391 : a_loc(std::make_shared<build_matrix>(*A.local()))
392 , a_rem(std::make_shared<build_matrix>(*A.remote()))
394 C = std::make_shared<CommPattern>(A.cpat());
396 this->a_rem->ncols = C->recv.count();
398 n_loc_rows = A.loc_rows();
399 n_loc_cols = A.loc_cols();
400 n_loc_nonzeros = A.loc_nonzeros();
401 n_glob_rows = A.glob_rows();
402 n_glob_cols = A.glob_cols();
403 n_glob_nonzeros = A.glob_nonzeros();
406 template <
class Matrix>
409 ptrdiff_t _n_loc_cols = -1)
410 : n_loc_rows(backend::nbRow(A))
411 , n_loc_cols(_n_loc_cols < 0 ? n_loc_rows : _n_loc_cols)
412 , n_loc_nonzeros(backend::nonzeros(A))
416 ptrdiff_t loc_beg = domain[comm.rank];
417 ptrdiff_t loc_end = domain[comm.rank + 1];
419 n_glob_cols = domain.
back();
420 n_glob_rows = comm.reduceSum(n_loc_rows);
421 n_glob_nonzeros = comm.reduceSum(n_loc_nonzeros);
424 a_loc = std::make_shared<build_matrix>();
425 a_rem = std::make_shared<build_matrix>();
427 build_matrix& A_loc = *a_loc;
428 build_matrix& A_rem = *a_rem;
430 A_loc.set_size(n_loc_rows, n_loc_cols,
true);
431 A_rem.set_size(n_loc_rows, 0,
true);
434 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
435 for (
auto a = backend::row_begin(A, i); a; ++a) {
436 ptrdiff_t c = a.col();
438 if (loc_beg <= c && c < loc_end)
446 A_loc.set_nonzeros(A_loc.scan_row_sizes());
447 A_rem.set_nonzeros(A_rem.scan_row_sizes());
450 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
451 ptrdiff_t loc_head = A_loc.ptr[i];
452 ptrdiff_t rem_head = A_rem.ptr[i];
454 for (
auto a = backend::row_begin(A, i); a; ++a) {
455 ptrdiff_t c = a.col();
456 value_type v = a.value();
458 if (loc_beg <= c && c < loc_end) {
459 A_loc.col[loc_head] = c - loc_beg;
460 A_loc.val[loc_head] = v;
464 A_rem.col[rem_head] = c;
465 A_rem.val[rem_head] = v;
472 C = std::make_shared<CommPattern>(comm, n_loc_cols, a_rem->nbNonZero(), a_rem->col);
473 a_rem->ncols = C->recv.count();
478 return C->mpi_comm();
481 std::shared_ptr<build_matrix> local()
const
486 std::shared_ptr<build_matrix> remote()
const
491 std::shared_ptr<matrix> local_backend()
const
496 std::shared_ptr<matrix> remote_backend()
const
501 ptrdiff_t loc_rows()
const
506 ptrdiff_t loc_cols()
const
511 ptrdiff_t loc_col_shift()
const
513 return C->loc_col_shift();
516 ptrdiff_t loc_nonzeros()
const
518 return n_loc_nonzeros;
521 ptrdiff_t glob_rows()
const
526 ptrdiff_t glob_cols()
const
531 ptrdiff_t glob_nonzeros()
const
533 return n_glob_nonzeros;
541 void set_local(std::shared_ptr<matrix> a)
546 void move_to_backend(
const backend_params& bprm = backend_params(),
bool keep_src =
false)
548 ARCCORE_ALINA_TIC(
"move to backend");
550 A_loc = Backend::copy_matrix(a_loc, bprm);
553 if (!A_rem && a_rem && a_rem->nbNonZero() > 0) {
555 auto rem_copy = std::make_shared<build_matrix>(*a_rem);
556 C->renumber(rem_copy->nbNonZero(), rem_copy->col);
557 A_rem = Backend::copy_matrix(rem_copy, bprm);
560 C->renumber(a_rem->nbNonZero(), a_rem->col);
561 A_rem = Backend::copy_matrix(a_rem, bprm);
565 C->move_to_backend(bprm);
571 ARCCORE_ALINA_TOC(
"move to backend");
574 template <
class A,
class VecX,
class B,
class VecY>
575 void mul(A alpha,
const VecX& x, B beta, VecY& y)
const
577 const auto one = math::identity<scalar_type>();
579 C->start_exchange(x);
582 backend::spmv(alpha, *A_loc, x, beta, y);
585 C->finish_exchange();
587 if (C->needs_remote())
588 backend::spmv(alpha, *A_rem, *C->x_rem, one, y);
591 template <
class Vec1,
class Vec2,
class Vec3>
592 void residual(
const Vec1& f,
const Vec2& x, Vec3& r)
const
594 const auto one = math::identity<scalar_type>();
596 C->start_exchange(x);
597 backend::residual(f, *A_loc, x, r);
599 C->finish_exchange();
601 if (C->needs_remote())
602 backend::spmv(-one, *A_rem, *C->x_rem, one, r);
607 std::shared_ptr<CommPattern> C;
608 std::shared_ptr<matrix> A_loc, A_rem;
609 std::shared_ptr<build_matrix> a_loc, a_rem;
611 ptrdiff_t n_loc_rows, n_glob_rows;
612 ptrdiff_t n_loc_cols, n_glob_cols;
613 ptrdiff_t n_loc_nonzeros, n_glob_nonzeros;
619template <
class Backend>
620std::shared_ptr<DistributedMatrix<Backend>>
623 ARCCORE_ALINA_TIC(
"MPI Transpose");
624 typedef typename Backend::value_type value_type;
626 typedef typename Backend::matrix build_matrix;
627 typedef typename Backend::col_type
col_type;
629 static const int tag_cnt = 2001;
630 static const int tag_col = 2002;
631 static const int tag_val = 2003;
634 const CommPattern& C = A.cpat();
636 build_matrix& A_loc = *A.local();
637 build_matrix& A_rem = *A.remote();
639 ptrdiff_t nrows = A_loc.ncols;
640 ptrdiff_t ncols = A_loc.nbRow();
652 std::shared_ptr<build_matrix> t_ptr;
654 std::vector<col_type> tmp_col(A_rem.col.data(), A_rem.col.data() + A_rem.nbNonZero());
655 C.renumber(tmp_col.size(), tmp_col.data());
657 col_type* a_rem_col = tmp_col.data();
658 col_type* a_rem_col_backup = A_rem.col.data();
659 A_rem.col.setPointerZeroCopy(a_rem_col);
663 t_ptr = transpose(A_rem);
665 A_rem.col.setPointerZeroCopy(a_rem_col_backup);
668 build_matrix& t_rem = *t_ptr;
672 ptrdiff_t loc_beg = domain[comm.rank];
673 for (
size_t i = 0; i < t_rem.nbNonZero(); ++i)
674 t_rem.col[i] += loc_beg;
677 std::vector<ptrdiff_t> row_size(t_rem.nbRow());
678 for (
size_t i = 0; i < t_rem.nbRow(); ++i)
679 row_size[i] = t_rem.ptr[i + 1] - t_rem.ptr[i];
683 std::vector<ptrdiff_t> rem_ptr(C.send.count() + 1);
686 for (
size_t i = 0; i < C.send.nbr.size(); ++i) {
687 ptrdiff_t beg = C.send.ptr[i];
688 ptrdiff_t end = C.send.ptr[i + 1];
690 recv_cnt_req[i] = comm.doIReceive(&rem_ptr[beg + 1], end - beg, C.send.nbr[i], tag_cnt);
693 for (
size_t i = 0; i < C.recv.nbr.size(); ++i) {
694 ptrdiff_t beg = C.recv.ptr[i];
695 ptrdiff_t end = C.recv.ptr[i + 1];
697 send_cnt_req[i] = comm.doISend(&row_size[beg], end - beg, C.recv.nbr[i], tag_cnt);
700 ARCCORE_ALINA_TIC(
"MPI Wait");
701 comm.waitAll(recv_cnt_req);
702 ARCCORE_ALINA_TOC(
"MPI Wait");
703 std::partial_sum(rem_ptr.begin(), rem_ptr.end(), rem_ptr.begin());
706 std::vector<col_type> rem_col(rem_ptr.back());
707 std::vector<value_type> rem_val(rem_ptr.back());
709 for (
size_t i = 0; i < C.send.nbr.size(); ++i) {
710 ptrdiff_t rbeg = C.send.ptr[i];
711 ptrdiff_t rend = C.send.ptr[i + 1];
713 ptrdiff_t cbeg = rem_ptr[rbeg];
714 ptrdiff_t cend = rem_ptr[rend];
716 recv_col_req[i] = comm.doIReceive(&rem_col[cbeg], cend - cbeg, C.send.nbr[i], tag_col);
717 recv_val_req[i] = comm.doIReceive(&rem_val[cbeg], cend - cbeg, C.send.nbr[i], tag_val);
720 for (
size_t i = 0; i < C.recv.nbr.size(); ++i) {
721 ptrdiff_t rbeg = C.recv.ptr[i];
722 ptrdiff_t rend = C.recv.ptr[i + 1];
724 ptrdiff_t cbeg = t_rem.ptr[rbeg];
725 ptrdiff_t cend = t_rem.ptr[rend];
727 send_col_req[i] = comm.doISend(&t_rem.col[cbeg], cend - cbeg, C.recv.nbr[i], tag_col);
728 send_val_req[i] = comm.doISend(&t_rem.val[cbeg], cend - cbeg, C.recv.nbr[i], tag_val);
733 auto T_ptr = std::make_shared<build_matrix>();
734 build_matrix& T_rem = *T_ptr;
735 T_rem.set_size(nrows, 0,
true);
737 for (
size_t i = 0; i < C.send.count(); ++i)
738 T_rem.ptr[1 + C.send.col[i]] += rem_ptr[i + 1] - rem_ptr[i];
740 T_rem.scan_row_sizes();
741 T_rem.set_nonzeros();
745 ARCCORE_ALINA_TIC(
"MPI Wait");
746 comm.waitAll(recv_col_req);
747 comm.waitAll(recv_val_req);
748 ARCCORE_ALINA_TOC(
"MPI Wait");
750 for (
size_t i = 0; i < C.send.count(); ++i) {
751 ptrdiff_t row = C.send.col[i];
752 ptrdiff_t head = T_rem.ptr[row];
754 for (ptrdiff_t j = rem_ptr[i]; j < rem_ptr[i + 1]; ++j, ++head) {
755 T_rem.col[head] = rem_col[j];
756 T_rem.val[head] = rem_val[j];
759 T_rem.ptr[row] = head;
762 std::rotate(T_rem.ptr.data(), T_rem.ptr.data() + nrows, T_rem.ptr.data() + nrows + 1);
765 ARCCORE_ALINA_TIC(
"MPI Wait");
766 comm.waitAll(send_cnt_req);
767 comm.waitAll(send_col_req);
768 comm.waitAll(send_val_req);
769 ARCCORE_ALINA_TOC(
"MPI Wait");
771 ARCCORE_ALINA_TOC(
"MPI Transpose");
773 return std::make_shared<DistributedMatrix<Backend>>(comm, transpose(A_loc), T_ptr);
779template <
class Backend>
780std::shared_ptr<typename Backend::matrix>
783 bool need_values =
true)
785 typedef typename Backend::matrix build_matrix;
787 static const int tag_ptr = 3001;
788 static const int tag_col = 3002;
789 static const int tag_val = 3003;
791 ARCCORE_ALINA_TIC(
"remote_rows");
794 build_matrix& B_loc = *B.local();
795 build_matrix& B_rem = *B.remote();
796 ptrdiff_t B_beg = B.loc_col_shift();
798 size_t nrecv = C.recv.nbr.size();
799 size_t nsend = C.send.nbr.size();
803 UniqueArray<MessagePassing::Request> send_ptr_req(nsend);
804 UniqueArray<MessagePassing::Request> send_col_req(nsend);
805 UniqueArray<MessagePassing::Request> send_val_req(nsend);
807 std::vector<build_matrix> send_rows(nsend);
809 for (
size_t k = 0; k < nsend; ++k) {
810 ptrdiff_t beg = C.send.ptr[k];
811 ptrdiff_t end = C.send.ptr[k + 1];
813 build_matrix& m = send_rows[k];
814 m.set_size(end - beg, 0,
false);
817 for (ptrdiff_t i = 0, ii = beg; ii < end; ++i, ++ii) {
818 ptrdiff_t r = C.send.col[ii];
820 ptrdiff_t w = (B_loc.ptr[r + 1] - B_loc.ptr[r]) + (B_rem.ptr[r + 1] - B_rem.ptr[r]);
827 send_ptr_req[k] = comm.doISend(m.ptr.data(), m.nbRow(), C.send.nbr[k], tag_ptr);
829 m.set_nonzeros(nnz, need_values);
831 for (ptrdiff_t i = 0, ii = beg, head = 0; ii < end; ++i, ++ii) {
832 ptrdiff_t r = C.send.col[ii];
835 for (ptrdiff_t j = B_loc.ptr[r]; j < B_loc.ptr[r + 1]; ++j) {
836 m.col[head] = B_loc.col[j] + B_beg;
839 m.val[head] = B_loc.val[j];
845 for (ptrdiff_t j = B_rem.ptr[r]; j < B_rem.ptr[r + 1]; ++j) {
846 m.col[head] = B_rem.col[j];
849 m.val[head] = B_rem.val[j];
855 send_col_req[k] = comm.doISend(m.col.data(), m.nbNonZero(), C.send.nbr[k], tag_col);
857 send_val_req[k] = comm.doISend(m.val.data(), m.nbNonZero(), C.send.nbr[k], tag_val);
861 UniqueArray<MessagePassing::Request> recv_ptr_req(nrecv);
862 UniqueArray<MessagePassing::Request> recv_col_req(nrecv);
863 UniqueArray<MessagePassing::Request> recv_val_req(nrecv);
865 auto B_nbr = std::make_shared<build_matrix>();
866 B_nbr->set_size(C.recv.count(), 0,
false);
869 for (
size_t k = 0; k < nrecv; ++k) {
870 ptrdiff_t beg = C.recv.ptr[k];
871 ptrdiff_t end = C.recv.ptr[k + 1];
873 recv_ptr_req[k] = comm.doIReceive(&B_nbr->ptr[beg + 1], end - beg, C.recv.nbr[k], tag_ptr);
876 ARCCORE_ALINA_TIC(
"MPI Wait");
877 comm.waitAll(recv_ptr_req);
878 ARCCORE_ALINA_TOC(
"MPI Wait");
880 B_nbr->set_nonzeros(B_nbr->scan_row_sizes(), need_values);
882 for (
size_t k = 0; k < nrecv; ++k) {
883 ptrdiff_t rbeg = C.recv.ptr[k];
884 ptrdiff_t rend = C.recv.ptr[k + 1];
886 ptrdiff_t cbeg = B_nbr->ptr[rbeg];
887 ptrdiff_t cend = B_nbr->ptr[rend];
889 recv_col_req[k] = comm.doIReceive(&B_nbr->col[cbeg], cend - cbeg, C.recv.nbr[k], tag_col);
892 recv_val_req[k] = comm.doIReceive(&B_nbr->val[cbeg], cend - cbeg, C.recv.nbr[k], tag_val);
895 ARCCORE_ALINA_TIC(
"MPI Wait");
896 comm.waitAll(send_ptr_req);
897 comm.waitAll(send_col_req);
898 comm.waitAll(recv_col_req);
901 comm.waitAll(send_val_req);
902 comm.waitAll(recv_val_req);
904 ARCCORE_ALINA_TOC(
"MPI Wait");
906 ARCCORE_ALINA_TOC(
"remote_rows");
913template <
class Backend>
914std::shared_ptr<DistributedMatrix<Backend>>
917 typedef typename Backend::value_type value_type;
918 using build_matrix = Backend::matrix;
919 typedef typename Backend::col_type
col_type;
920 ARCCORE_ALINA_TIC(
"product");
924 build_matrix& A_loc = *A.local();
925 build_matrix& A_rem = *A.remote();
926 build_matrix& B_loc = *B.local();
927 build_matrix& B_rem = *B.remote();
929 ptrdiff_t A_rows = A.loc_rows();
930 ptrdiff_t B_cols = B.loc_cols();
932 ptrdiff_t B_beg = B.loc_col_shift();
933 ptrdiff_t B_end = B_beg + B_cols;
935 auto b_nbr = remote_rows(Acp, B);
936 build_matrix& B_nbr = *b_nbr;
940 std::vector<col_type> rem_cols(B_rem.nbNonZero() + B_nbr.nbNonZero());
942 std::copy(B_nbr.col.data(), B_nbr.col.data() + B_nbr.nbNonZero(),
943 std::copy(B_rem.col.data(), B_rem.col.data() + B_rem.nbNonZero(), rem_cols.begin()));
945 std::sort(rem_cols.begin(), rem_cols.end());
946 rem_cols.erase(std::unique(rem_cols.begin(), rem_cols.end()), rem_cols.end());
948 ptrdiff_t n_rem_cols = 0;
949 std::unordered_map<ptrdiff_t, int> rem_idx(2 * rem_cols.size());
950 for (ptrdiff_t c : rem_cols) {
951 if (c >= B_beg && c < B_end)
953 rem_idx[c] = n_rem_cols++;
957 auto c_loc = std::make_shared<build_matrix>();
958 auto c_rem = std::make_shared<build_matrix>();
960 build_matrix& C_loc = *c_loc;
961 build_matrix& C_rem = *c_rem;
963 C_loc.set_size(A_rows, B_cols,
false);
964 C_rem.set_size(A_rows, 0,
false);
969 ARCCORE_ALINA_TIC(
"analyze");
971 std::vector<ptrdiff_t> loc_marker(B_end - B_beg, -1);
972 std::vector<ptrdiff_t> rem_marker(n_rem_cols, -1);
974 for (ptrdiff_t ia = begin; ia < (begin + size); ++ia) {
975 ptrdiff_t loc_cols = 0;
976 ptrdiff_t rem_cols = 0;
978 for (ptrdiff_t ja = A_loc.ptr[ia], ea = A_loc.ptr[ia + 1]; ja < ea; ++ja) {
979 ptrdiff_t ca = A_loc.col[ja];
981 for (ptrdiff_t jb = B_loc.ptr[ca], eb = B_loc.ptr[ca + 1]; jb < eb; ++jb) {
982 ptrdiff_t cb = B_loc.col[jb];
984 if (loc_marker[cb] != ia) {
990 for (ptrdiff_t jb = B_rem.ptr[ca], eb = B_rem.ptr[ca + 1]; jb < eb; ++jb) {
991 ptrdiff_t cb = rem_idx[B_rem.col[jb]];
993 if (rem_marker[cb] != ia) {
1000 for (ptrdiff_t ja = A_rem.ptr[ia], ea = A_rem.ptr[ia + 1]; ja < ea; ++ja) {
1001 ptrdiff_t ca = Acp.local_index(A_rem.col[ja]);
1003 for (ptrdiff_t jb = B_nbr.ptr[ca], eb = B_nbr.ptr[ca + 1]; jb < eb; ++jb) {
1004 ptrdiff_t cb = B_nbr.col[jb];
1006 if (cb >= B_beg && cb < B_end) {
1009 if (loc_marker[cb] != ia) {
1010 loc_marker[cb] = ia;
1017 if (rem_marker[cb] != ia) {
1018 rem_marker[cb] = ia;
1025 C_loc.ptr[ia + 1] = loc_cols;
1026 C_rem.ptr[ia + 1] = rem_cols;
1029 ARCCORE_ALINA_TOC(
"analyze");
1031 C_loc.set_nonzeros(C_loc.scan_row_sizes());
1032 C_rem.set_nonzeros(C_rem.scan_row_sizes());
1034 ARCCORE_ALINA_TIC(
"compute");
1036 std::vector<ptrdiff_t> loc_marker(B_end - B_beg, -1);
1037 std::vector<ptrdiff_t> rem_marker(n_rem_cols, -1);
1039 for (ptrdiff_t ia = begin; ia < (begin + size); ++ia) {
1040 ptrdiff_t loc_beg = C_loc.ptr[ia];
1041 ptrdiff_t rem_beg = C_rem.ptr[ia];
1042 ptrdiff_t loc_end = loc_beg;
1043 ptrdiff_t rem_end = rem_beg;
1045 for (ptrdiff_t ja = A_loc.ptr[ia], ea = A_loc.ptr[ia + 1]; ja < ea; ++ja) {
1046 ptrdiff_t ca = A_loc.col[ja];
1047 value_type va = A_loc.val[ja];
1049 for (ptrdiff_t jb = B_loc.ptr[ca], eb = B_loc.ptr[ca + 1]; jb < eb; ++jb) {
1050 ptrdiff_t cb = B_loc.col[jb];
1051 value_type vb = B_loc.val[jb];
1053 if (loc_marker[cb] < loc_beg) {
1054 loc_marker[cb] = loc_end;
1056 C_loc.col[loc_end] = cb;
1057 C_loc.val[loc_end] = va * vb;
1062 C_loc.val[loc_marker[cb]] += va * vb;
1066 for (ptrdiff_t jb = B_rem.ptr[ca], eb = B_rem.ptr[ca + 1]; jb < eb; ++jb) {
1067 ptrdiff_t gb = B_rem.col[jb];
1068 ptrdiff_t cb = rem_idx[gb];
1069 value_type vb = B_rem.val[jb];
1071 if (rem_marker[cb] < rem_beg) {
1072 rem_marker[cb] = rem_end;
1074 C_rem.col[rem_end] = gb;
1075 C_rem.val[rem_end] = va * vb;
1080 C_rem.val[rem_marker[cb]] += va * vb;
1085 for (ptrdiff_t ja = A_rem.ptr[ia], ea = A_rem.ptr[ia + 1]; ja < ea; ++ja) {
1086 ptrdiff_t ca = Acp.local_index(A_rem.col[ja]);
1087 value_type va = A_rem.val[ja];
1089 for (ptrdiff_t jb = B_nbr.ptr[ca], eb = B_nbr.ptr[ca + 1]; jb < eb; ++jb) {
1090 ptrdiff_t gb = B_nbr.col[jb];
1091 value_type vb = B_nbr.val[jb];
1093 if (gb >= B_beg && gb < B_end) {
1094 ptrdiff_t cb = gb - B_beg;
1096 if (loc_marker[cb] < loc_beg) {
1097 loc_marker[cb] = loc_end;
1099 C_loc.col[loc_end] = cb;
1100 C_loc.val[loc_end] = va * vb;
1105 C_loc.val[loc_marker[cb]] += va * vb;
1109 ptrdiff_t cb = rem_idx[gb];
1111 if (rem_marker[cb] < rem_beg) {
1112 rem_marker[cb] = rem_end;
1114 C_rem.col[rem_end] = gb;
1115 C_rem.val[rem_end] = va * vb;
1120 C_rem.val[rem_marker[cb]] += va * vb;
1127 ARCCORE_ALINA_TOC(
"compute");
1128 ARCCORE_ALINA_TOC(
"product");
1130 return std::make_shared<DistributedMatrix<Backend>>(A.comm(), c_loc, c_rem);
1136template <
class Backend,
class T>
1139 using build_matrix = Backend::matrix;
1141 build_matrix& A_loc = *A.local();
1142 build_matrix& A_rem = *A.remote();
1144 ptrdiff_t n = A_loc.nbRow();
1147 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1148 for (ptrdiff_t j = A_loc.ptr[i], e = A_loc.ptr[i + 1]; j < e; ++j)
1150 for (ptrdiff_t j = A_rem.ptr[i], e = A_rem.ptr[i + 1]; j < e; ++j)
1159template <
class Backend>
1162 sort_rows(*A.local());
1163 sort_rows(*A.remote());
1174namespace Arcane::Alina::backend
1180template <
class Backend>
1185 return A.loc_rows();
1189template <
class Backend,
class Alpha,
class Vec1,
class Beta,
class Vec2>
1192 static void apply(Alpha alpha,
1194 const Vec1& x, Beta beta, Vec2& y)
1196 A.mul(alpha, x, beta, y);
1200template <
class Backend,
class Vec1,
class Vec2,
class Vec3>
1203 static void apply(
const Vec1& rhs,
1205 const Vec2& x, Vec3& r)
1207 A.residual(rhs, x, r);
1218namespace Arcane::Alina
1225template <
class Backend>
1226std::shared_ptr<numa_vector<typename Backend::value_type>>
1229 return diagonal(*A.local(), invert);
1236template <
bool scale,
class Backend>
1237typename math::scalar_of<typename Backend::value_type>::type
1238spectral_radius(
const DistributedMatrix<Backend>& A,
int power_iters = 0)
1240 ARCCORE_ALINA_TIC(
"spectral radius");
1241 typedef typename Backend::value_type value_type;
1242 typedef typename math::rhs_of<value_type>::type rhs_type;
1243 typedef typename math::scalar_of<value_type>::type scalar_type;
1244 typedef CSRMatrix<value_type> build_matrix;
1246 AlinaCommunicator comm = A.comm();
1248 const build_matrix& A_loc = *A.local();
1249 const build_matrix& A_rem = *A.remote();
1250 const CommunicationPattern<Backend>& C = A.cpat();
1252 const ptrdiff_t n = A_loc.nbRow();
1253 scalar_type radius = 0;
1256 if (power_iters <= 0) {
1258 scalar_type emax = 0;
1259 value_type dia = math::identity<value_type>();
1261 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1264 for (ptrdiff_t j = A_loc.ptr[i], e = A_loc.ptr[i + 1]; j < e; ++j) {
1265 ptrdiff_t c = A_loc.col[j];
1266 value_type v = A_loc.val[j];
1270 if (scale && c == i)
1274 for (ptrdiff_t j = A_rem.ptr[i], e = A_rem.ptr[i + 1]; j < e; ++j)
1275 s += math::norm(A_rem.val[j]);
1278 s *= math::norm(math::inverse(dia));
1280 emax = std::max(emax, s);
1292 std::atomic<scalar_type> atomic_b0_loc_norm = {};
1298 std::mt19937 rng(comm.size * nt + tid);
1299 std::uniform_real_distribution<scalar_type> rnd(-1, 1);
1301 scalar_type t_norm = 0;
1303 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1304 rhs_type v = math::constant<rhs_type>(rnd(rng));
1307 t_norm += math::norm(math::inner_product(v, v));
1309 for (ptrdiff_t j = A_rem.ptr[i], e = A_rem.ptr[i + 1]; j < e; ++j) {
1310 rem_col[j] = C.local_index(A_rem.col[j]);
1315 atomic_b0_loc_norm += t_norm;
1317 scalar_type b0_loc_norm = atomic_b0_loc_norm;
1318 scalar_type b0_norm = comm.reduceSum(b0_loc_norm);
1321 b0_norm = 1 /
sqrt(b0_norm);
1323 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1324 b0[i] = b0_norm * b0[i];
1328 std::vector<rhs_type> b0_send(C.send.count());
1329 std::vector<rhs_type> b0_recv(C.recv.count());
1331 for (
size_t i = 0, m = C.send.count(); i < m; ++i)
1332 b0_send[i] = b0[C.send.col[i]];
1333 C.exchange(b0_send.data(), b0_recv.data());
1335 for (
int iter = 0; iter < power_iters;) {
1340 std::atomic<scalar_type> atomic_b1_loc_norm = 0;
1341 std::atomic<scalar_type> atomic_loc_radius = 0;
1344 scalar_type t_norm = 0;
1345 scalar_type t_radi = 0;
1346 value_type dia = math::identity<value_type>();
1348 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1349 rhs_type s = math::zero<rhs_type>();
1351 for (ptrdiff_t j = A_loc.ptr[i], e = A_loc.ptr[i + 1]; j < e; ++j) {
1352 ptrdiff_t c = A_loc.col[j];
1353 value_type v = A_loc.val[j];
1354 if (scale && c == i)
1359 for (ptrdiff_t j = A_rem.ptr[i], e = A_rem.ptr[i + 1]; j < e; ++j)
1360 s += A_rem.val[j] * b0_recv[rem_col[j]];
1363 s = math::inverse(dia) * s;
1365 t_norm += math::norm(math::inner_product(s, s));
1366 t_radi += math::norm(math::inner_product(s, b0[i]));
1373 atomic_b1_loc_norm += t_norm;
1374 atomic_loc_radius += t_radi;
1377 scalar_type b1_loc_norm = atomic_b1_loc_norm;
1378 scalar_type loc_radius = atomic_loc_radius;
1380 radius = comm.reduceSum(loc_radius);
1382 if (++iter < power_iters) {
1383 scalar_type b1_norm;
1384 b1_norm = comm.reduceSum(b1_loc_norm);
1387 b1_norm = 1 /
sqrt(b1_norm);
1389 for (ptrdiff_t i = begin; i < (begin + size); ++i) {
1390 b0[i] = b1_norm * b1[i];
1394 for (
size_t i = 0, m = C.send.count(); i < m; ++i)
1395 b0_send[i] = b0[C.send.col[i]];
1396 C.exchange(b0_send.data(), b0_recv.data());
1400 ARCCORE_ALINA_TOC(
"spectral radius");
1402 return radius < 0 ? static_cast<scalar_type>(2) : radius;
Call to handle communication pattern.
Distributed Matrix using message passing.
NUMA-aware vector container.
T & back()
Last element of the array.
static Int32 maxAllowedThread()
Maximum number of allowed threads for multi-threading.
Loop execution information.
Matrix class, to be used by user.
static Int32 currentTaskThreadIndex()
Index (between 0 and nbAllowedThread()-1) of the thread executing the current task.
1D data vector with value semantics (STL style).
Vector class, to be used by user.
__host__ __device__ DataType doAtomic(DataType *ptr, ValueType value)
Applies the atomic operation Operation to the value at address ptr with the value value.
C void mpAllToAll(IMessagePassingMng *pm, Span< const char > send_buf, Span< char > recv_buf, Int32 count)
apfloat sqrt(apfloat v)
Square root of v.
void arccoreParallelFor(const ComplexForLoopRanges< RankValue, IndexType_ > &loop_ranges, const ForLoopRunInfo &run_info, const LambdaType &lambda_function, const ReducerArgs &... reducer_args)
Applies the lambda function lambda_function concurrently over the iteration interval given by loop_ra...
std::int32_t Int32
Signed integer type of 32 bits.
Convenience wrapper around MPI_Comm.
UniqueArray< T > exclusive_sum(T n) const
Exclusive sum over mpi communicator.
Alina::detail::empty_params params
Implementation for residual error compuatation.
Implementation for function returning the number of rows in a matrix.
Implementation for matrix-vector product.